Variant report

Variant	rs8020388
Chromosome Location	chr14:79177511-79177512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1158081	0.86[CHB][hapmap]
rs17108086	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1863029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140803	0.82[AFR][1000 genomes]
rs8008702	1.00[CEU][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8012832	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8013671	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:79175000-79177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:79175800-79178000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
6	chr14:79177000-79177600	Enhancers	Fetal Kidney	kidney
7	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain
8	chr14:79177200-79187400	Weak transcription	Brain Germinal Matrix	brain
9	chr14:79177200-79188000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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