Variant report

Variant	rs11159378
Chromosome Location	chr14:79188139-79188140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10150558	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11159377	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11628562	0.90[CEU][hapmap]
rs11845056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101009	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs12432000	1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12432585	0.82[CEU][hapmap]
rs12432833	0.81[CEU][hapmap]
rs12434689	0.89[CHB][hapmap];0.81[AMR][1000 genomes]
rs17108125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1863030	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2081340	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55834264	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57125846	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7143966	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs72685424	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005048	0.87[ASN][1000 genomes]
rs8008702	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs8012832	0.83[ASN][1000 genomes]
rs8013671	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs8013958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
3	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain
4	chr14:79181600-79188600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:79187200-79190000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:79187400-79190000	Enhancers	Brain Germinal Matrix	brain
7	chr14:79187600-79189200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:79187600-79190000	Enhancers	Brain Hippocampus Middle	brain
9	chr14:79187600-79192400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:79187800-79189400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:79188000-79188600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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