Variant report

Variant	rs10150558
Chromosome Location	chr14:79168851-79168852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11159377	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11159378	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1158079	0.80[ASN][1000 genomes]
rs11845056	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11845058	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12434689	0.84[AMR][1000 genomes]
rs17108079	0.80[ASN][1000 genomes]
rs17108081	0.80[ASN][1000 genomes]
rs17108083	0.80[ASN][1000 genomes]
rs17108125	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17108128	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1863030	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2081340	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55834264	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57125846	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7143785	0.80[ASN][1000 genomes]
rs7143852	0.80[ASN][1000 genomes]
rs7143966	0.89[EUR][1000 genomes]
rs7158798	0.80[ASN][1000 genomes]
rs7159663	0.80[ASN][1000 genomes]
rs72685424	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8013958	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs970465	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79176800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links