Variant report

Variant	rs12433281
Chromosome Location	chr14:63273822-63273823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1021346	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12891322	0.87[ASN][1000 genomes]
rs12891982	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12893269	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2171876	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35679534	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56397364	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7493979	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs961066	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv983834	chr14:63272169-63277791	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv3353160	chr14:63273142-63277728	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63255600-63274400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links