Variant report

Variant	rs35679534
Chromosome Location	chr14:63263503-63263504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1021346	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12433281	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12882526	0.88[ASN][1000 genomes]
rs12891322	0.82[AMR][1000 genomes]
rs12891982	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12893269	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2171876	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35872261	0.84[ASN][1000 genomes]
rs36107257	0.82[ASN][1000 genomes]
rs56397364	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7493979	0.82[EUR][1000 genomes]
rs961066	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63255600-63274400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63262600-63263600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:63262600-63263800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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