Variant report

Variant	rs12435282
Chromosome Location	chr14:85726866-85726867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12435232	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12879855	0.92[ASN][1000 genomes]
rs17796669	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1839313	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1867082	0.82[CHB][hapmap]
rs2029135	0.87[ASN][1000 genomes]
rs34155469	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34235559	0.93[AFR][1000 genomes]
rs35048084	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7151509	0.90[ASN][1000 genomes]
rs7160419	1.00[CHB][hapmap]
rs8008508	0.98[EUR][1000 genomes]
rs8009290	0.80[EUR][1000 genomes]
rs8022384	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8022603	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85717200-85727800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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