Variant report

Variant	rs12438389
Chromosome Location	chr15:35361671-35361672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12439622	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12441742	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441760	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12442948	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703038	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703041	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703043	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703056	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703067	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703069	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703085	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703086	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703088	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35354000-35363200	Weak transcription	Placenta	Placenta
2	chr15:35356800-35363000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr15:35357000-35379400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:35359200-35362400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:35359600-35361800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:35360000-35370400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:35360200-35362200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr15:35360400-35362000	Enhancers	K562	blood
9	chr15:35360400-35362800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:35360400-35363000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:35360400-35363200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:35360800-35361800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr15:35361000-35362000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:35361200-35362000	Enhancers	Brain Hippocampus Middle	brain
15	chr15:35361600-35362000	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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