Variant report

Variant	rs12439622
Chromosome Location	chr15:35357489-35357490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35277451..35279992-chr15:35357452..35360430,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10152248	1.00[EUR][1000 genomes]
rs10152264	1.00[EUR][1000 genomes]
rs12324073	1.00[EUR][1000 genomes]
rs12438389	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12441742	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12441760	1.00[AMR][1000 genomes]
rs12442948	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12442973	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13379891	1.00[EUR][1000 genomes]
rs16959959	1.00[EUR][1000 genomes]
rs16959962	1.00[EUR][1000 genomes]
rs35187802	1.00[EUR][1000 genomes]
rs3896311	1.00[EUR][1000 genomes]
rs4586382	1.00[EUR][1000 genomes]
rs59121678	1.00[EUR][1000 genomes]
rs7181165	1.00[EUR][1000 genomes]
rs72703038	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72703041	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72703043	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72703056	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72703067	1.00[AMR][1000 genomes]
rs72703069	1.00[AMR][1000 genomes]
rs72703085	1.00[AMR][1000 genomes]
rs72703086	1.00[AMR][1000 genomes]
rs72703088	1.00[AMR][1000 genomes]
rs8030801	1.00[EUR][1000 genomes]
rs962457	1.00[EUR][1000 genomes]
rs9806284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35337400-35361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:35353200-35359800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:35354000-35363200	Weak transcription	Placenta	Placenta
4	chr15:35354200-35359200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr15:35354200-35359200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr15:35354200-35359400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:35354200-35360800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:35354800-35359200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:35355200-35359200	Weak transcription	GM12878-XiMat	blood
10	chr15:35355200-35359600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:35355200-35360000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:35355400-35359800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:35356400-35357600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr15:35356400-35357600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr15:35356400-35357600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:35356400-35357600	Enhancers	Fetal Stomach	stomach
17	chr15:35356400-35357800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:35356400-35357800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr15:35356800-35363000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr15:35357000-35379400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:35357200-35359200	Weak transcription	Ovary	ovary
22	chr15:35357200-35359200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:35357200-35359600	Weak transcription	K562	blood
24	chr15:35357200-35359800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr15:35357400-35359200	Weak transcription	Fetal Kidney	kidney
26	chr15:35357400-35359400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:35357400-35359400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:35357400-35359600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:35357400-35359800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:35357400-35359800	Weak transcription	Fetal Lung	lung

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