Variant report

Variant	rs72703069
Chromosome Location	chr15:35383130-35383131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12438389	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12439622	1.00[AMR][1000 genomes]
rs12441742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12441760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12442973	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66627439	1.00[ASN][1000 genomes]
rs66768574	1.00[ASN][1000 genomes]
rs72703038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv569155	chr15:35371869-35408386	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv1052721	chr15:35381487-35437841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35378000-35396400	Weak transcription	Left Ventricle	heart
2	chr15:35379600-35385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:35379800-35383400	Enhancers	HepG2	liver
4	chr15:35382200-35386600	Weak transcription	Ovary	ovary
5	chr15:35383000-35384600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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