Variant report

Variant	rs13379891
Chromosome Location	chr15:35220786-35220787
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35219148..35220809-chr15:35259856..35261653,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10152248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10152264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220830	1.00[EUR][1000 genomes]
rs10451003	0.96[AFR][1000 genomes]
rs12324073	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12439622	1.00[EUR][1000 genomes]
rs16959959	1.00[EUR][1000 genomes]
rs16959962	1.00[EUR][1000 genomes]
rs35187802	1.00[EUR][1000 genomes]
rs3896311	1.00[EUR][1000 genomes]
rs4586382	1.00[EUR][1000 genomes]
rs57197192	0.96[AFR][1000 genomes]
rs59121678	1.00[EUR][1000 genomes]
rs7168195	1.00[EUR][1000 genomes]
rs7181165	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8030801	1.00[EUR][1000 genomes]
rs962457	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9806284	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806300	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35186000-35223200	Weak transcription	Gastric	stomach
3	chr15:35186000-35232000	Weak transcription	Fetal Brain Male	brain
4	chr15:35186400-35238800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:35197600-35238800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
7	chr15:35199000-35223200	Weak transcription	Spleen	Spleen
8	chr15:35204600-35220800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:35204600-35221600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:35204600-35223600	Weak transcription	Psoas Muscle	Psoas
11	chr15:35204600-35227000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:35207000-35223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:35207000-35234600	Weak transcription	Stomach Mucosa	stomach
14	chr15:35207000-35259400	Weak transcription	Small Intestine	intestine
15	chr15:35207400-35223600	Weak transcription	Colonic Mucosa	Colon
16	chr15:35207400-35239800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:35207600-35223800	Weak transcription	Right Ventricle	heart
18	chr15:35208200-35223200	Weak transcription	Lung	lung
19	chr15:35209800-35232200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:35210600-35223200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:35211000-35221800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:35211000-35222000	Weak transcription	NHDF-Ad	bronchial
23	chr15:35211000-35224000	Weak transcription	NHLF	lung
24	chr15:35211000-35231800	Weak transcription	Brain Angular Gyrus	brain
25	chr15:35212000-35223600	Weak transcription	HepG2	liver
26	chr15:35212200-35223600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:35212600-35221800	Weak transcription	Hela-S3	cervix
28	chr15:35213800-35235400	Strong transcription	Liver	Liver
29	chr15:35213800-35238800	Strong transcription	Placenta	Placenta
30	chr15:35213800-35238800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr15:35214000-35238200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:35214200-35237600	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:35214200-35238000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr15:35214200-35238200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:35215000-35223200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:35215600-35223200	Weak transcription	Fetal Intestine Small	intestine
37	chr15:35215600-35227800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:35215800-35238800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:35216200-35228200	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:35216600-35226400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:35216800-35236600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:35217000-35221000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:35217000-35228600	Strong transcription	HSMM	muscle
44	chr15:35217000-35237000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr15:35217000-35238600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr15:35217200-35234600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:35217200-35238200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr15:35217400-35226000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:35217400-35226200	Strong transcription	Primary T cells from cord blood	blood
50	chr15:35217400-35226400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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