Variant report

Variant	rs16959959
Chromosome Location	chr15:35156585-35156586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:35155989-35157767	K562	blood:	n/a	n/a

Variant related genes	Relation type
AQR	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10152248	1.00[EUR][1000 genomes]
rs10152264	1.00[EUR][1000 genomes]
rs10220830	1.00[EUR][1000 genomes]
rs12324073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12439622	1.00[EUR][1000 genomes]
rs13379891	1.00[EUR][1000 genomes]
rs16959962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959968	0.94[AFR][1000 genomes]
rs16959977	1.00[AFR][1000 genomes]
rs16959984	1.00[AFR][1000 genomes]
rs35187802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3896311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4586382	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59072667	1.00[AFR][1000 genomes]
rs59121678	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168195	1.00[EUR][1000 genomes]
rs7178063	1.00[AFR][1000 genomes]
rs7181165	1.00[EUR][1000 genomes]
rs8030801	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8033978	1.00[AFR][1000 genomes]
rs8035082	1.00[AFR][1000 genomes]
rs962457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35142600-35180200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:35142600-35185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:35145200-35198200	Weak transcription	Colonic Mucosa	Colon
5	chr15:35145600-35161200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:35145600-35184600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:35145800-35185400	Weak transcription	Psoas Muscle	Psoas
8	chr15:35146400-35156600	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr15:35146400-35175400	Weak transcription	Small Intestine	intestine
10	chr15:35146600-35160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:35146600-35160800	Strong transcription	Primary B cells from cord blood	blood
12	chr15:35146600-35184800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:35146600-35185200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:35146800-35158000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:35146800-35159000	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:35146800-35161200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:35146800-35183200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr15:35146800-35185200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:35146800-35185200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr15:35147000-35157800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:35147000-35161400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:35147000-35168200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:35147200-35162000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:35147200-35163600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:35147600-35160800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:35147600-35161200	Weak transcription	Right Ventricle	heart
27	chr15:35148000-35158200	Strong transcription	Placenta	Placenta
28	chr15:35148200-35161200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr15:35148200-35185400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:35148400-35160800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:35148400-35175200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:35148600-35158200	Strong transcription	Primary hematopoietic stem cells	blood
33	chr15:35148600-35160800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:35148600-35161400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:35148600-35161400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:35148600-35162400	Strong transcription	Liver	Liver
37	chr15:35148600-35167600	Strong transcription	Adipose Nuclei	Adipose
38	chr15:35148800-35157600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:35148800-35161200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:35148800-35162600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:35149200-35158200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:35149200-35166800	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:35149400-35160000	Weak transcription	Brain Hippocampus Middle	brain
44	chr15:35149800-35184400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:35150200-35172400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr15:35150400-35170000	Weak transcription	Thymus	Thymus
47	chr15:35150400-35185200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:35150800-35157200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:35151200-35161400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:35151800-35162400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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