Variant report

Variant	rs962457
Chromosome Location	chr15:35236209-35236210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10152248	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10152264	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10220830	1.00[EUR][1000 genomes]
rs10451003	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs12324073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12439622	1.00[EUR][1000 genomes]
rs13379891	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16959959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35187802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3896311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4586382	1.00[EUR][1000 genomes]
rs57197192	0.86[AFR][1000 genomes]
rs59121678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168195	1.00[EUR][1000 genomes]
rs7170851	1.00[CEU][hapmap]
rs7171773	1.00[CEU][hapmap]
rs7181165	1.00[EUR][1000 genomes]
rs8030801	1.00[EUR][1000 genomes]
rs9806284	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9806300	1.00[CEU][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35186400-35238800	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr15:35197600-35238800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
4	chr15:35207000-35259400	Weak transcription	Small Intestine	intestine
5	chr15:35207400-35239800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:35213800-35238800	Strong transcription	Placenta	Placenta
7	chr15:35213800-35238800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:35214000-35238200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr15:35214200-35237600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:35214200-35238000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:35214200-35238200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:35215800-35238800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:35216800-35236600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:35217000-35237000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:35217000-35238600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr15:35217200-35238200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:35217400-35237000	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:35217400-35238200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr15:35217400-35238400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:35217400-35238400	Strong transcription	Adipose Nuclei	Adipose
21	chr15:35218000-35238200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:35218600-35238400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr15:35218600-35238400	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr15:35219600-35238200	Strong transcription	Fetal Intestine Large	intestine
25	chr15:35220000-35238800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:35220600-35260200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:35220800-35239800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:35220800-35251400	Weak transcription	Aorta	Aorta
29	chr15:35221000-35238400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:35221200-35238600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:35221200-35260800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:35221800-35236800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:35222400-35238400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:35222800-35242600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr15:35223400-35260600	Weak transcription	Fetal Heart	heart
36	chr15:35224200-35238000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:35224200-35251200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:35224200-35258800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:35225200-35250400	Weak transcription	Spleen	Spleen
40	chr15:35225200-35251400	Weak transcription	Colonic Mucosa	Colon
41	chr15:35225200-35254200	Weak transcription	Right Ventricle	heart
42	chr15:35225400-35259200	Weak transcription	Psoas Muscle	Psoas
43	chr15:35226000-35251400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:35227000-35237600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:35227400-35237000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:35227400-35238400	Strong transcription	Primary B cells from cord blood	blood
47	chr15:35227600-35237000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:35227800-35238600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:35228000-35236600	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr15:35228000-35238400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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