Variant report

Variant	rs35187802
Chromosome Location	chr15:35182441-35182442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52023403..52026177-chr15:35180246..35182636,2	MCF-7	breast:
2	chr15:34953489..34955951-chr15:35181219..35183157,2	K562	blood:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10152248	1.00[EUR][1000 genomes]
rs10152264	1.00[EUR][1000 genomes]
rs10220830	1.00[EUR][1000 genomes]
rs12324073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12439622	1.00[EUR][1000 genomes]
rs13379891	1.00[EUR][1000 genomes]
rs16959959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959968	0.94[AFR][1000 genomes]
rs16959977	1.00[AFR][1000 genomes]
rs16959984	1.00[AFR][1000 genomes]
rs3896311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4586382	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59072667	1.00[AFR][1000 genomes]
rs59121678	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168195	1.00[EUR][1000 genomes]
rs7178063	1.00[AFR][1000 genomes]
rs7181165	1.00[EUR][1000 genomes]
rs8030801	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8033978	1.00[AFR][1000 genomes]
rs8035082	1.00[AFR][1000 genomes]
rs962457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35142600-35185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:35145200-35198200	Weak transcription	Colonic Mucosa	Colon
4	chr15:35145600-35184600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:35145800-35185400	Weak transcription	Psoas Muscle	Psoas
6	chr15:35146600-35184800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:35146600-35185200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:35146800-35183200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr15:35146800-35185200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:35146800-35185200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:35148200-35185400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:35149800-35184400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:35150400-35185200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:35152200-35184400	Weak transcription	Stomach Mucosa	stomach
15	chr15:35153800-35184400	Weak transcription	Fetal Heart	heart
16	chr15:35153800-35185200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:35154000-35185200	Weak transcription	Gastric	stomach
18	chr15:35154000-35185600	Weak transcription	Fetal Brain Male	brain
19	chr15:35155200-35184400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:35156800-35184800	Strong transcription	HSMM	muscle
21	chr15:35157600-35185200	Weak transcription	Aorta	Aorta
22	chr15:35157600-35185200	Weak transcription	Esophagus	oesophagus
23	chr15:35157800-35185200	Weak transcription	Spleen	Spleen
24	chr15:35159600-35184800	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:35161800-35185200	Weak transcription	Brain Angular Gyrus	brain
26	chr15:35161800-35185200	Weak transcription	Right Ventricle	heart
27	chr15:35162000-35184800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:35162000-35184800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr15:35162200-35184600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:35162400-35184200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:35162600-35184800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:35165000-35183000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:35165000-35184200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:35165000-35185400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:35167400-35183000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:35167400-35184400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:35167400-35185200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:35167400-35185200	Weak transcription	Lung	lung
39	chr15:35168400-35184800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:35169400-35182600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:35169400-35185200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:35169800-35184800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:35170000-35184800	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr15:35170200-35185200	Strong transcription	Liver	Liver
45	chr15:35170600-35184400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:35170600-35185200	Weak transcription	Pancreas	Pancrea
47	chr15:35171000-35186600	Strong transcription	Adipose Nuclei	Adipose
48	chr15:35171400-35183000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:35171400-35184800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:35171400-35185600	Strong transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links