Variant report

Variant	rs12324073
Chromosome Location	chr15:35197968-35197969
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35195184..35198331-chr15:35198423..35200783,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10152248	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10152264	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10220830	1.00[EUR][1000 genomes]
rs10451003	1.00[AFR][1000 genomes]
rs12439622	1.00[EUR][1000 genomes]
rs13379891	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16959959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35187802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3896311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4586382	1.00[EUR][1000 genomes]
rs57197192	1.00[AFR][1000 genomes]
rs59121678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168195	1.00[EUR][1000 genomes]
rs7181165	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8030801	1.00[EUR][1000 genomes]
rs962457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806284	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9806300	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35145200-35198200	Weak transcription	Colonic Mucosa	Colon
3	chr15:35185200-35205200	Weak transcription	Stomach Mucosa	stomach
4	chr15:35186000-35198000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:35186000-35198000	Weak transcription	Spleen	Spleen
6	chr15:35186000-35198400	Weak transcription	Aorta	Aorta
7	chr15:35186000-35198400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:35186000-35199600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:35186000-35204200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:35186000-35206400	Weak transcription	Right Ventricle	heart
11	chr15:35186000-35206600	Weak transcription	Small Intestine	intestine
12	chr15:35186000-35212400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:35186000-35212600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:35186000-35213000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr15:35186000-35220000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:35186000-35220000	Weak transcription	Pancreas	Pancrea
17	chr15:35186000-35223200	Weak transcription	Gastric	stomach
18	chr15:35186000-35232000	Weak transcription	Fetal Brain Male	brain
19	chr15:35186200-35198000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:35186200-35198200	Weak transcription	Esophagus	oesophagus
21	chr15:35186200-35198400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:35186200-35202200	Weak transcription	NHEK	skin
23	chr15:35186200-35212000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr15:35186200-35212400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:35186200-35212400	Strong transcription	Liver	Liver
26	chr15:35186400-35201000	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:35186400-35205400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:35186400-35238800	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:35186600-35198800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:35186600-35204000	Weak transcription	NHLF	lung
31	chr15:35186600-35206000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:35186600-35212200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr15:35186600-35212200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:35186600-35212400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:35187200-35204000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:35187200-35204200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:35187200-35212000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:35187400-35212000	Strong transcription	Adipose Nuclei	Adipose
39	chr15:35187800-35204200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:35188200-35199000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:35189200-35199600	Weak transcription	Fetal Kidney	kidney
42	chr15:35190000-35198200	Weak transcription	Brain Anterior Caudate	brain
43	chr15:35190000-35198600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr15:35190200-35198600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr15:35190400-35198200	Weak transcription	Fetal Muscle Leg	muscle
46	chr15:35190800-35198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:35191400-35212800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:35192000-35212200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:35192200-35204200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:35192200-35211200	Strong transcription	Rectal Mucosa Donor 31	rectum

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