Variant report

Variant	rs12439062
Chromosome Location	chr15:58702329-58702330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr15:58702143-58702857	K562	blood:	n/a	n/a
2	EP300	chr15:58702102-58702743	K562	blood:	n/a	n/a
3	KAP1	chr15:58701862-58702540	U2OS	brain:	n/a	n/a
4	CEBPB	chr15:58702091-58702443	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr15:58702121-58702377	K562	blood:	n/a	n/a
6	RCOR1	chr15:58702006-58702947	K562	blood:	n/a	n/a
7	CEBPB	chr15:58702087-58702441	K562	blood:	n/a	n/a
8	CEBPB	chr15:58702078-58702406	K562	blood:	n/a	n/a
9	ARID3A	chr15:58702198-58702395	K562	blood:	n/a	n/a
10	MYC	chr15:58702171-58702997	K562	blood:	n/a	chr15:58702252-58702261
11	MAZ	chr15:58702248-58702844	K562	blood:	n/a	chr15:58702252-58702261
12	ZNF384	chr15:58702018-58703088	K562	blood:	n/a	n/a

Variant related genes	Relation type
LIPC	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16940241	1.00[EUR][1000 genomes]
rs1838505	1.00[EUR][1000 genomes]
rs56208243	1.00[EUR][1000 genomes]
rs659556	1.00[EUR][1000 genomes]
rs74018454	1.00[EUR][1000 genomes]
rs8024136	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58690800-58702400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:58694800-58702600	Weak transcription	HepG2	liver
3	chr15:58694800-58716000	Weak transcription	Esophagus	oesophagus
4	chr15:58700200-58702600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:58700400-58702400	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:58700400-58702600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr15:58700400-58702600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:58700400-58702600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:58700400-58702800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:58700600-58702400	Weak transcription	Brain Angular Gyrus	brain
11	chr15:58700600-58702600	Weak transcription	Brain Anterior Caudate	brain
12	chr15:58700600-58702600	Weak transcription	Brain Substantia Nigra	brain
13	chr15:58701200-58702400	Enhancers	K562	blood
14	chr15:58701800-58702400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:58701800-58703000	Enhancers	Left Ventricle	heart
16	chr15:58702000-58702400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr15:58702000-58702400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr15:58702000-58702400	Enhancers	Fetal Thymus	thymus
19	chr15:58702000-58702800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:58702200-58702400	Enhancers	Primary T cells from cord blood	blood
21	chr15:58702200-58702400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:58702200-58702400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr15:58702200-58702400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr15:58702200-58702400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:58702200-58702400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr15:58702200-58702400	Enhancers	Fetal Kidney	kidney
27	chr15:58702200-58702400	Enhancers	GM12878-XiMat	blood
28	chr15:58702200-58702600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:58702200-58702600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr15:58702200-58702600	Enhancers	Thymus	Thymus
31	chr15:58702200-58703000	Enhancers	Primary B cells from peripheral blood	blood
32	chr15:58702200-58703400	Flanking Active TSS	Dnd41	blood

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