Variant report

Variant	rs12443458
Chromosome Location	chr15:92666293-92666294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92663926..92666705-chr15:92668588..92670209,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11632973	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11638063	0.88[CHD][hapmap];0.82[JPT][hapmap]
rs17597602	0.87[CEU][hapmap]
rs207954	0.82[CEU][hapmap]
rs207959	0.81[CEU][hapmap]
rs207962	0.81[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12443458	SLCO3A1	cis	cerebellum	SCAN
rs12443458	AGBL1	cis	cerebellum	SCAN

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:92648200-92692600	Weak transcription	NHLF	lung
5	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
6	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:92655600-92667400	Weak transcription	Fetal Brain Male	brain
8	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:92660600-92678600	Weak transcription	Thymus	Thymus
10	chr15:92661000-92667600	Weak transcription	Fetal Brain Female	brain
11	chr15:92661000-92670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
13	chr15:92662000-92667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:92662000-92667800	Weak transcription	Brain Germinal Matrix	brain
15	chr15:92662200-92667000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:92662200-92667000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:92662200-92673400	Weak transcription	HMEC	breast
18	chr15:92662200-92673800	Weak transcription	NHEK	skin
19	chr15:92662400-92667000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:92662800-92666800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:92663000-92677200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:92663200-92670200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:92663200-92671000	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr15:92663400-92672800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:92663400-92677600	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:92663400-92679200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:92663400-92679400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:92663600-92666400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr15:92663600-92676200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:92663800-92667200	Weak transcription	Right Atrium	heart
31	chr15:92664000-92667000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:92664000-92670000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr15:92664000-92707000	Weak transcription	Liver	Liver
34	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
35	chr15:92664200-92666400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:92664400-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:92664600-92673400	Weak transcription	Fetal Lung	lung
38	chr15:92664600-92675400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:92664800-92666400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:92664800-92666400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:92665000-92666400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr15:92665000-92666400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:92665200-92667400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:92665200-92689000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:92665400-92667200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:92665400-92667200	Weak transcription	Left Ventricle	heart
47	chr15:92665600-92667200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:92665600-92671200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:92665800-92666400	Strong transcription	Ovary	ovary
50	chr15:92665800-92666800	Weak transcription	Brain Angular Gyrus	brain

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