Variant report

Variant	rs207954
Chromosome Location	chr15:92657373-92657374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92656493..92660596-chr15:92660615..92664122,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12443458	0.82[CEU][hapmap]
rs1517620	0.85[CHB][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs169618	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17597602	0.95[CEU][hapmap]
rs207953	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs207955	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs207957	0.95[CEU][hapmap];0.84[CHB][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs207958	0.89[CHB][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs207959	0.91[CEU][hapmap];0.80[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs207960	0.86[CEU][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs207962	0.91[CEU][hapmap];0.94[GIH][hapmap]
rs207963	0.87[CEU][hapmap];0.80[CHB][hapmap];0.88[GIH][hapmap]
rs9707930	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3584923	chr15:92653655-92663201	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Acute lymphoblastic leukemia (childhood)	22076464	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs207954	SLCO3A1	cis	cerebellum	SCAN
rs207954	SLCO3A1	cis	multi-tissue	Pritchard

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:92641000-92663600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:92641400-92660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:92641400-92660400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:92641400-92660400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:92642400-92665000	Weak transcription	Gastric	stomach
8	chr15:92643000-92658000	Weak transcription	Liver	Liver
9	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:92645400-92659800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:92645400-92663400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:92646200-92658000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:92647600-92658600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:92647600-92663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:92647800-92659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:92648200-92692600	Weak transcription	NHLF	lung
21	chr15:92648600-92660600	Weak transcription	HMEC	breast
22	chr15:92649000-92664000	Weak transcription	Ovary	ovary
23	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
24	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:92649600-92657600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:92649600-92665000	Weak transcription	Esophagus	oesophagus
27	chr15:92650800-92660400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:92652400-92664200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:92653000-92663400	Weak transcription	Primary T cells from cord blood	blood
30	chr15:92653000-92664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:92653200-92660800	Enhancers	Fetal Thymus	thymus
32	chr15:92653200-92663200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr15:92653400-92659200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:92653800-92659200	Weak transcription	Fetal Kidney	kidney
35	chr15:92654000-92658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:92654600-92665000	Weak transcription	Spleen	Spleen
37	chr15:92655200-92664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:92655200-92665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:92655400-92658400	Weak transcription	Thymus	Thymus
40	chr15:92655400-92660400	Weak transcription	Adipose Nuclei	Adipose
41	chr15:92655600-92660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:92655600-92660400	Weak transcription	Right Ventricle	heart
43	chr15:92655600-92660400	Weak transcription	Osteobl	bone
44	chr15:92655600-92661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:92655600-92667400	Weak transcription	Fetal Brain Male	brain
46	chr15:92655800-92657600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:92655800-92657800	Weak transcription	Fetal Heart	heart
48	chr15:92655800-92658400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:92655800-92659200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:92655800-92660400	Weak transcription	Fetal Brain Female	brain

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