Variant report

Variant	rs207963
Chromosome Location	chr15:92652336-92652337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1517620	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs169618	0.91[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap]
rs17597602	0.83[CEU][hapmap]
rs207954	0.87[CEU][hapmap];0.80[CHB][hapmap];0.88[GIH][hapmap]
rs207955	0.91[CEU][hapmap];0.89[CHB][hapmap]
rs207957	0.90[CEU][hapmap];0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs207958	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs207959	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.83[MKK][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs207960	0.88[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs207962	0.88[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[GIH][hapmap];0.94[LWK][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs207974	0.82[MEX][hapmap]
rs2239295	0.84[GIH][hapmap];0.82[MEX][hapmap]
rs917355	0.85[GIH][hapmap]
rs9707930	0.91[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.89[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs207963	SLCO3A1	cis	cerebellum	SCAN
rs207963	HAPLN3	cis	cerebellum	SCAN

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:92640000-92652600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr15:92640400-92652400	Enhancers	Fetal Thymus	thymus
4	chr15:92641000-92657200	Weak transcription	Pancreas	Pancrea
5	chr15:92641000-92663600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:92641400-92660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:92641400-92660400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:92641400-92660400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:92642400-92665000	Weak transcription	Gastric	stomach
11	chr15:92642600-92656600	Weak transcription	Aorta	Aorta
12	chr15:92642800-92653400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:92643000-92658000	Weak transcription	Liver	Liver
14	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr15:92645200-92656800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:92645400-92655800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:92645400-92659800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:92645400-92663400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:92645600-92654600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:92645800-92654400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:92646000-92656200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:92646200-92652600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:92646200-92654000	Weak transcription	Brain Angular Gyrus	brain
28	chr15:92646200-92658000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr15:92647000-92652600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:92647400-92652600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:92647600-92658600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:92647600-92663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:92647800-92656000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:92647800-92659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:92648000-92652800	Enhancers	Fetal Stomach	stomach
36	chr15:92648000-92655800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:92648200-92692600	Weak transcription	NHLF	lung
38	chr15:92648400-92652400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:92648600-92655800	Enhancers	Fetal Heart	heart
40	chr15:92648600-92660600	Weak transcription	HMEC	breast
41	chr15:92649000-92664000	Weak transcription	Ovary	ovary
42	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
43	chr15:92649200-92652400	Weak transcription	Right Atrium	heart
44	chr15:92649200-92653200	Weak transcription	Brain Anterior Caudate	brain
45	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr15:92649400-92655800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:92649600-92654400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:92649600-92657600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:92649600-92665000	Weak transcription	Esophagus	oesophagus
50	chr15:92649800-92652400	Strong transcription	Stomach Smooth Muscle	stomach

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