Variant report

Variant	rs207974
Chromosome Location	chr15:92638652-92638653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:92638620-92639005	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11638201	0.82[EUR][1000 genomes]
rs1517619	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1517620	0.96[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1983350	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs207959	0.92[MEX][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs207960	0.92[MEX][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs207962	1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs207963	0.82[MEX][hapmap]
rs207965	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs207969	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs207970	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs207971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs22198	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2238363	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2239295	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2892291	0.87[CEU][hapmap]
rs4247080	0.94[CHB][hapmap];0.86[EUR][1000 genomes]
rs4984337	0.87[EUR][1000 genomes]
rs871167	0.88[CEU][hapmap]
rs917355	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9707930	0.84[LWK][hapmap];0.82[MKK][hapmap];0.85[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs207974	HAPLN3	cis	cerebellum	SCAN
rs207974	SLCO3A1	cis	cerebellum	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92621000-92639200	Weak transcription	Lung	lung
2	chr15:92623400-92640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:92627400-92641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:92630800-92641800	Weak transcription	NHEK	skin
6	chr15:92631400-92640600	Weak transcription	Esophagus	oesophagus
7	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:92632600-92641200	Weak transcription	Thymus	Thymus
9	chr15:92634000-92638800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:92634800-92640600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:92634800-92640600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:92634800-92640600	Weak transcription	Fetal Brain Female	brain
13	chr15:92635000-92639400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:92635000-92640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:92635000-92640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:92635000-92640600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:92635000-92640600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:92635000-92640600	Weak transcription	Brain Angular Gyrus	brain
19	chr15:92635000-92640600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:92635200-92640600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr15:92635400-92638800	Weak transcription	Right Ventricle	heart
22	chr15:92635400-92641000	Weak transcription	HSMMtube	muscle
23	chr15:92635600-92640800	Weak transcription	Brain Anterior Caudate	brain
24	chr15:92635800-92640600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:92635800-92640800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:92636000-92638800	Weak transcription	Spleen	Spleen
27	chr15:92636000-92640600	Weak transcription	Left Ventricle	heart
28	chr15:92636000-92648600	Weak transcription	Adipose Nuclei	Adipose
29	chr15:92636200-92640600	Weak transcription	Osteobl	bone
30	chr15:92636200-92640800	Weak transcription	Fetal Heart	heart
31	chr15:92636600-92640800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:92636800-92640600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:92637200-92638800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:92637200-92640600	Weak transcription	Right Atrium	heart
35	chr15:92637400-92640600	Weak transcription	Fetal Brain Male	brain
36	chr15:92637800-92641000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr15:92638000-92638800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:92638000-92638800	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr15:92638000-92639400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr15:92638000-92639600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:92638000-92640000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr15:92638000-92640000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr15:92638000-92640000	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr15:92638000-92641200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr15:92638000-92641200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr15:92638000-92641400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr15:92638000-92641400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:92638000-92641600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:92638200-92639000	Enhancers	Primary B cells from cord blood	blood
50	chr15:92638200-92639400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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