Variant report

Variant	rs2238363
Chromosome Location	chr15:92644214-92644215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92643862..92645656-chr15:92652617..92654137,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11638201	0.82[EUR][1000 genomes]
rs1517619	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1517620	0.96[CEU][hapmap]
rs1983350	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs207959	0.83[EUR][1000 genomes]
rs207960	0.83[EUR][1000 genomes]
rs207962	0.84[EUR][1000 genomes]
rs207965	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs207969	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs207970	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs207971	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs207974	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs22198	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2239295	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2892291	0.87[CEU][hapmap]
rs4247080	0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs4984337	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs871167	0.88[CEU][hapmap]
rs917355	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:92636000-92648600	Weak transcription	Adipose Nuclei	Adipose
4	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:92639600-92644800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:92639600-92645000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr15:92640000-92652600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:92640400-92652400	Enhancers	Fetal Thymus	thymus
9	chr15:92640800-92648400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:92640800-92648400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:92641000-92648800	Weak transcription	Esophagus	oesophagus
12	chr15:92641000-92657200	Weak transcription	Pancreas	Pancrea
13	chr15:92641000-92663600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:92641400-92644800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:92641400-92645000	Weak transcription	Spleen	Spleen
16	chr15:92641400-92645800	Weak transcription	Right Atrium	heart
17	chr15:92641400-92647000	Weak transcription	Brain Germinal Matrix	brain
18	chr15:92641400-92660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:92641400-92660400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:92641400-92660400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:92641600-92644600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:92641600-92647400	Weak transcription	Lung	lung
23	chr15:92641600-92649800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:92641600-92651800	Weak transcription	Fetal Brain Female	brain
25	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:92642000-92645000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:92642200-92645000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:92642200-92649800	Weak transcription	Fetal Intestine Small	intestine
29	chr15:92642400-92644800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:92642400-92644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:92642400-92648800	Weak transcription	Right Ventricle	heart
32	chr15:92642400-92665000	Weak transcription	Gastric	stomach
33	chr15:92642600-92644800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:92642600-92644800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr15:92642600-92645000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:92642600-92645000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:92642600-92645000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:92642600-92645000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:92642600-92645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:92642600-92645000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:92642600-92645000	Weak transcription	Fetal Heart	heart
42	chr15:92642600-92645000	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr15:92642600-92645600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:92642600-92647400	Weak transcription	Ovary	ovary
45	chr15:92642600-92648600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:92642600-92648800	Weak transcription	Left Ventricle	heart
47	chr15:92642600-92648800	Weak transcription	HSMMtube	muscle
48	chr15:92642600-92651000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr15:92642600-92656600	Weak transcription	Aorta	Aorta
50	chr15:92642800-92645000	Weak transcription	Brain Substantia Nigra	brain

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