Variant report

Variant	rs207965
Chromosome Location	chr15:92642946-92642947
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11638201	0.82[EUR][1000 genomes]
rs1517619	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1517620	0.96[CEU][hapmap]
rs1983350	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs207959	0.83[EUR][1000 genomes]
rs207960	0.83[EUR][1000 genomes]
rs207962	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs207969	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs207970	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs207971	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs207974	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs22198	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2238363	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2239295	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2892291	0.87[CEU][hapmap]
rs4247080	0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4984337	0.87[EUR][1000 genomes]
rs871167	0.88[CEU][hapmap]
rs917355	1.00[CEU][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:92636000-92648600	Weak transcription	Adipose Nuclei	Adipose
4	chr15:92639400-92643400	Weak transcription	Primary T cells from cord blood	blood
5	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:92639600-92644800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:92639600-92645000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr15:92639800-92643400	Weak transcription	GM12878-XiMat	blood
9	chr15:92640000-92652600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:92640400-92652400	Enhancers	Fetal Thymus	thymus
11	chr15:92640800-92643000	Enhancers	Brain Anterior Caudate	brain
12	chr15:92640800-92648400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:92640800-92648400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:92641000-92643600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:92641000-92643600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:92641000-92648800	Weak transcription	Esophagus	oesophagus
17	chr15:92641000-92657200	Weak transcription	Pancreas	Pancrea
18	chr15:92641000-92663600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:92641200-92643400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:92641200-92643600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr15:92641400-92643400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:92641400-92643400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:92641400-92643600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr15:92641400-92644200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr15:92641400-92644200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:92641400-92644800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:92641400-92645000	Weak transcription	Spleen	Spleen
28	chr15:92641400-92645800	Weak transcription	Right Atrium	heart
29	chr15:92641400-92647000	Weak transcription	Brain Germinal Matrix	brain
30	chr15:92641400-92660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:92641400-92660400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:92641400-92660400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:92641600-92643800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:92641600-92643800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:92641600-92643800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr15:92641600-92644000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:92641600-92644600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr15:92641600-92647400	Weak transcription	Lung	lung
39	chr15:92641600-92649800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:92641600-92651800	Weak transcription	Fetal Brain Female	brain
41	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr15:92642000-92643000	Enhancers	Fetal Lung	lung
43	chr15:92642000-92644200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:92642000-92645000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr15:92642200-92643000	Enhancers	Brain Angular Gyrus	brain
46	chr15:92642200-92645000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:92642200-92649800	Weak transcription	Fetal Intestine Small	intestine
48	chr15:92642400-92643000	Enhancers	Liver	Liver
49	chr15:92642400-92644800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:92642400-92644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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