Variant report

Variant	rs207970
Chromosome Location	chr15:92640587-92640588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:92640570-92641089	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr15:92640443-92641678	SK-N-SH	brain:	n/a	chr15:92641521-92641534 chr15:92640991-92641010 chr15:92641575-92641589
3	TEAD4	chr15:92640563-92641096	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr15:92640480-92640630	HVMF	connective:	n/a	n/a
5	CTCF	chr15:92640540-92640690	GM12873	blood:	n/a	n/a
6	SMC3	chr15:92640582-92641685	SK-N-SH	brain:	n/a	chr15:92640992-92641006
7	TEAD4	chr15:92640501-92641130	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr15:92640560-92640710	AG04449	skin:	n/a	n/a
9	CTCF	chr15:92640571-92641537	A549	lung:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
10	CTCF	chr15:92640436-92641448	SK-N-SH	brain:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
11	CTCF	chr15:92640520-92640670	HCM	heart:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92640503..92641006-chr15:93257734..93258635,2	K562	blood:

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11638201	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1517619	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1517620	0.96[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1983350	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs207959	0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs207960	0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs207962	1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs207965	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs207969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs207974	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs22198	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2238363	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2239295	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2892291	0.87[CEU][hapmap]
rs4247080	0.94[CHB][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4984337	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs871167	0.88[CEU][hapmap]
rs917355	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9707930	0.84[LWK][hapmap];0.85[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs207970	SLCO3A1	cis	multi-tissue	Pritchard

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92623400-92640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:92627400-92641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:92630800-92641800	Weak transcription	NHEK	skin
5	chr15:92631400-92640600	Weak transcription	Esophagus	oesophagus
6	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:92632600-92641200	Weak transcription	Thymus	Thymus
8	chr15:92634800-92640600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:92634800-92640600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:92634800-92640600	Weak transcription	Fetal Brain Female	brain
11	chr15:92635000-92640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:92635000-92640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:92635000-92640600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:92635000-92640600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:92635000-92640600	Weak transcription	Brain Angular Gyrus	brain
16	chr15:92635000-92640600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:92635200-92640600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:92635400-92641000	Weak transcription	HSMMtube	muscle
19	chr15:92635600-92640800	Weak transcription	Brain Anterior Caudate	brain
20	chr15:92635800-92640600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:92635800-92640800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:92636000-92640600	Weak transcription	Left Ventricle	heart
23	chr15:92636000-92648600	Weak transcription	Adipose Nuclei	Adipose
24	chr15:92636200-92640600	Weak transcription	Osteobl	bone
25	chr15:92636200-92640800	Weak transcription	Fetal Heart	heart
26	chr15:92636600-92640800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:92636800-92640600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:92637200-92640600	Weak transcription	Right Atrium	heart
29	chr15:92637400-92640600	Weak transcription	Fetal Brain Male	brain
30	chr15:92637800-92641000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr15:92638000-92641200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr15:92638000-92641200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr15:92638000-92641400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr15:92638000-92641400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:92638000-92641600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:92638200-92640800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:92638200-92641600	Enhancers	Primary T cells fromperipheralblood	blood
38	chr15:92638200-92641600	Weak transcription	Ovary	ovary
39	chr15:92638600-92640600	Weak transcription	Pancreas	Pancrea
40	chr15:92638800-92640600	Strong transcription	Right Ventricle	heart
41	chr15:92639400-92640600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr15:92639400-92640800	Genic enhancers	Primary monocytes fromperipheralblood	blood
43	chr15:92639400-92640800	Weak transcription	Liver	Liver
44	chr15:92639400-92641400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr15:92639400-92641400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:92639400-92641600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:92639400-92643400	Weak transcription	Primary T cells from cord blood	blood
48	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:92639600-92640600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:92639600-92640600	Weak transcription	Brain Hippocampus Middle	brain

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