Variant report

Variant	rs207969
Chromosome Location	chr15:92640705-92640706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr15:92640681-92641223	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr15:92640618-92640737	ProgFib	skin:	n/a	n/a
3	CTCF	chr15:92640600-92640750	HFF	foreskin:	n/a	n/a
4	CTCF	chr15:92640625-92641104	GM19240	blood:	n/a	chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
5	MAX	chr15:92640570-92641089	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr15:92640632-92641250	HCT-116	colon:	n/a	chr15:92640991-92641010
7	RAD21	chr15:92640443-92641678	SK-N-SH	brain:	n/a	chr15:92641521-92641534 chr15:92640991-92641010 chr15:92641575-92641589
8	CTCF	chr15:92640660-92640761	GM10266	blood:	n/a	n/a
9	RAD21	chr15:92640672-92641396	HCT-116	colon:	n/a	chr15:92640991-92641010
10	CTCF	chr15:92640695-92641192	GM12878	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
11	SIN3A	chr15:92640644-92641154	H1-hESC	embryonic stem cell:	n/a	n/a
12	CTCF	chr15:92640600-92640750	GM12864	blood:	n/a	n/a
13	RAD21	chr15:92640604-92641337	A549	lung:	n/a	chr15:92640991-92641010
14	RAD21	chr15:92640698-92641284	HepG2	liver:	n/a	chr15:92640991-92641010
15	TEAD4	chr15:92640563-92641096	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr15:92640620-92641106	GM19239	blood:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007
17	CTCF	chr15:92640655-92640723	GM12878	blood:	n/a	n/a
18	RAD21	chr15:92640682-92641301	H1-hESC	embryonic stem cell:	n/a	chr15:92640991-92641010
19	CTCF	chr15:92640639-92640773	Fibrobl	skin:	n/a	n/a
20	RAD21	chr15:92640696-92641302	A549	lung:	n/a	chr15:92640991-92641010
21	CTCF	chr15:92640653-92640728	K562	blood:	n/a	n/a
22	CTCF	chr15:92640626-92640780	GM19238	blood:	n/a	n/a
23	SMC3	chr15:92640582-92641685	SK-N-SH	brain:	n/a	chr15:92640992-92641006
24	CTCF	chr15:92640672-92641266	H1-hESC	embryonic stem cell:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
25	TEAD4	chr15:92640501-92641130	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr15:92640600-92640750	AG04449	skin:	n/a	n/a
27	CTCF	chr15:92640560-92640710	AG04449	skin:	n/a	n/a
28	RAD21	chr15:92640618-92641353	MCF-7	breast:	n/a	chr15:92640991-92641010
29	CTCF	chr15:92640620-92640770	HCPEpiC	choroid plexus:	n/a	n/a
30	CTCF	chr15:92640571-92641537	A549	lung:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
31	RAD21	chr15:92640615-92641323	MCF-7	breast:	n/a	chr15:92640991-92641010
32	RAD21	chr15:92640658-92641415	H1-hESC	embryonic stem cell:	n/a	chr15:92640991-92641010
33	CTCF	chr15:92640436-92641448	SK-N-SH	brain:	n/a	chr15:92641098-92641106 chr15:92640992-92641013 chr15:92640990-92641008 chr15:92640991-92641007 chr15:92641095-92641108
34	CTCF	chr15:92640630-92640752	GM12892	blood:	n/a	n/a
35	ZNF143	chr15:92640600-92641171	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTCF	chr15:92640619-92640783	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92640503..92641006-chr15:93257734..93258635,2	K562	blood:

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11638201	0.82[EUR][1000 genomes]
rs1517619	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983350	0.86[EUR][1000 genomes]
rs207959	0.83[EUR][1000 genomes]
rs207960	0.83[EUR][1000 genomes]
rs207962	0.84[EUR][1000 genomes]
rs207965	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs207970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207971	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207974	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs22198	0.90[EUR][1000 genomes]
rs2238363	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2239295	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4247080	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4984337	0.87[EUR][1000 genomes]
rs917355	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92626000-92651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:92627400-92641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:92630800-92641800	Weak transcription	NHEK	skin
4	chr15:92631400-92648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:92632600-92641200	Weak transcription	Thymus	Thymus
6	chr15:92635400-92641000	Weak transcription	HSMMtube	muscle
7	chr15:92635600-92640800	Weak transcription	Brain Anterior Caudate	brain
8	chr15:92635800-92640800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:92636000-92648600	Weak transcription	Adipose Nuclei	Adipose
10	chr15:92636200-92640800	Weak transcription	Fetal Heart	heart
11	chr15:92636600-92640800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:92637800-92641000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:92638000-92641200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr15:92638000-92641200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr15:92638000-92641400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr15:92638000-92641400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:92638000-92641600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:92638200-92640800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:92638200-92641600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr15:92638200-92641600	Weak transcription	Ovary	ovary
21	chr15:92639400-92640800	Genic enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:92639400-92640800	Weak transcription	Liver	Liver
23	chr15:92639400-92641400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr15:92639400-92641400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:92639400-92641600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:92639400-92643400	Weak transcription	Primary T cells from cord blood	blood
27	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:92639600-92641400	Enhancers	Primary hematopoietic stem cells	blood
29	chr15:92639600-92644800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:92639600-92645000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:92639800-92640800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:92639800-92640800	Weak transcription	Brain Substantia Nigra	brain
33	chr15:92639800-92641000	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr15:92639800-92641400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:92639800-92641800	Weak transcription	Aorta	Aorta
36	chr15:92639800-92643400	Weak transcription	GM12878-XiMat	blood
37	chr15:92640000-92642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:92640000-92652600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:92640200-92640800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:92640200-92641200	Genic enhancers	Spleen	Spleen
41	chr15:92640400-92641000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr15:92640400-92641600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:92640400-92652400	Enhancers	Fetal Thymus	thymus
44	chr15:92640600-92640800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr15:92640600-92640800	Enhancers	Brain Angular Gyrus	brain
46	chr15:92640600-92640800	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr15:92640600-92641000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:92640600-92641000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:92640600-92641000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr15:92640600-92641000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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