Variant report

Variant	rs17597602
Chromosome Location	chr15:92660704-92660705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92657916..92660596-chr15:92660615..92664103,3	K562	blood:
2	chr15:92656493..92660596-chr15:92660615..92664122,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11632973	0.84[CHB][hapmap];0.90[EUR][1000 genomes]
rs12443458	0.87[CEU][hapmap]
rs169618	0.91[CEU][hapmap]
rs16974269	0.81[JPT][hapmap]
rs207954	0.95[CEU][hapmap]
rs207955	0.91[CEU][hapmap]
rs207957	0.91[CEU][hapmap]
rs207959	0.87[CEU][hapmap]
rs207960	0.82[CEU][hapmap]
rs207962	0.87[CEU][hapmap]
rs207963	0.83[CEU][hapmap]
rs2283461	0.81[JPT][hapmap]
rs9707930	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3584923	chr15:92653655-92663201	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:92641000-92663600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:92642400-92665000	Weak transcription	Gastric	stomach
5	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:92645400-92663400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:92647600-92663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:92648200-92692600	Weak transcription	NHLF	lung
13	chr15:92649000-92664000	Weak transcription	Ovary	ovary
14	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
15	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:92649600-92665000	Weak transcription	Esophagus	oesophagus
17	chr15:92652400-92664200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:92653000-92663400	Weak transcription	Primary T cells from cord blood	blood
19	chr15:92653000-92664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:92653200-92660800	Enhancers	Fetal Thymus	thymus
21	chr15:92653200-92663200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:92654600-92665000	Weak transcription	Spleen	Spleen
23	chr15:92655200-92664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:92655200-92665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:92655600-92661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:92655600-92667400	Weak transcription	Fetal Brain Male	brain
27	chr15:92656000-92665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:92656200-92665000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:92657200-92663600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:92657400-92663600	Weak transcription	Lung	lung
32	chr15:92657800-92665000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:92658200-92661000	Genic enhancers	Left Ventricle	heart
34	chr15:92658200-92663600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:92658400-92661200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:92658400-92663000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:92658600-92661800	Weak transcription	Fetal Heart	heart
38	chr15:92658600-92665200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:92658800-92663600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:92659000-92661000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:92659000-92661200	Enhancers	Brain Substantia Nigra	brain
42	chr15:92659200-92660800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:92659200-92660800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:92659200-92661000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr15:92659200-92661000	Enhancers	Brain Cingulate Gyrus	brain
46	chr15:92659200-92661400	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr15:92659200-92661400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr15:92659200-92661400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr15:92659200-92661600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr15:92659200-92663600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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