Variant report

Variant	rs16974269
Chromosome Location	chr15:92658933-92658934
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92656493..92660596-chr15:92660615..92664122,4	K562	blood:
2	chr15:92657916..92660596-chr15:92660615..92664103,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11638063	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16946421	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16946422	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17597602	0.81[JPT][hapmap]
rs2283461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34100035	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34609355	0.93[EUR][1000 genomes]
rs6496892	1.00[CEU][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6496893	0.81[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7170650	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8033892	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3584923	chr15:92653655-92663201	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92639400-92661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:92641000-92663600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:92641400-92660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:92641400-92660400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:92641400-92660400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:92642400-92665000	Weak transcription	Gastric	stomach
8	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:92645400-92659800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:92645400-92663400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:92647600-92663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:92647800-92659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:92648200-92692600	Weak transcription	NHLF	lung
18	chr15:92648600-92660600	Weak transcription	HMEC	breast
19	chr15:92649000-92664000	Weak transcription	Ovary	ovary
20	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
21	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:92649600-92665000	Weak transcription	Esophagus	oesophagus
23	chr15:92650800-92660400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:92652400-92664200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:92653000-92663400	Weak transcription	Primary T cells from cord blood	blood
26	chr15:92653000-92664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:92653200-92660800	Enhancers	Fetal Thymus	thymus
28	chr15:92653200-92663200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr15:92653400-92659200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:92653800-92659200	Weak transcription	Fetal Kidney	kidney
31	chr15:92654600-92665000	Weak transcription	Spleen	Spleen
32	chr15:92655200-92664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:92655200-92665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:92655400-92660400	Weak transcription	Adipose Nuclei	Adipose
35	chr15:92655600-92660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:92655600-92660400	Weak transcription	Right Ventricle	heart
37	chr15:92655600-92660400	Weak transcription	Osteobl	bone
38	chr15:92655600-92661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:92655600-92667400	Weak transcription	Fetal Brain Male	brain
40	chr15:92655800-92659200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr15:92655800-92660400	Weak transcription	Fetal Brain Female	brain
42	chr15:92656000-92659400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:92656000-92659400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:92656000-92659600	Weak transcription	Fetal Lung	lung
45	chr15:92656000-92659800	Weak transcription	Brain Angular Gyrus	brain
46	chr15:92656000-92659800	Weak transcription	Right Atrium	heart
47	chr15:92656000-92660400	Weak transcription	NHDF-Ad	bronchial
48	chr15:92656000-92665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr15:92656200-92660000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:92656200-92665000	Weak transcription	Rectal Smooth Muscle	rectum

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