Variant report

Variant	rs6496893
Chromosome Location	chr15:92663630-92663631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92657916..92660596-chr15:92660615..92664103,3	K562	blood:
2	chr15:92656493..92660596-chr15:92660615..92664122,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11632723	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs11638063	0.81[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs16946421	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16946422	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16974269	0.81[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2283461	1.00[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34100035	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34609355	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6496892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7170650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8033892	0.90[GIH][hapmap]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:92642400-92665000	Weak transcription	Gastric	stomach
3	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:92648200-92692600	Weak transcription	NHLF	lung
9	chr15:92649000-92664000	Weak transcription	Ovary	ovary
10	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
11	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:92649600-92665000	Weak transcription	Esophagus	oesophagus
13	chr15:92652400-92664200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:92653000-92664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:92654600-92665000	Weak transcription	Spleen	Spleen
16	chr15:92655200-92664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:92655200-92665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:92655600-92667400	Weak transcription	Fetal Brain Male	brain
19	chr15:92656000-92665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr15:92656200-92665000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:92657800-92665000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:92658600-92665200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:92659200-92664600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr15:92659600-92664000	Enhancers	Liver	Liver
26	chr15:92659600-92664600	Enhancers	Fetal Lung	lung
27	chr15:92660600-92678600	Weak transcription	Thymus	Thymus
28	chr15:92660800-92664000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:92660800-92664200	Weak transcription	Fetal Kidney	kidney
30	chr15:92660800-92665000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:92661000-92663800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:92661000-92664200	Weak transcription	Brain Anterior Caudate	brain
33	chr15:92661000-92664200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:92661000-92664200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:92661000-92665000	Weak transcription	Brain Angular Gyrus	brain
36	chr15:92661000-92665000	Weak transcription	Pancreas	Pancrea
37	chr15:92661000-92667600	Weak transcription	Fetal Brain Female	brain
38	chr15:92661000-92670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
40	chr15:92661200-92664400	Weak transcription	Brain Substantia Nigra	brain
41	chr15:92661400-92665600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:92661600-92664400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:92661600-92665000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:92662000-92664000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:92662000-92665400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:92662000-92665600	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:92662000-92667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:92662000-92667800	Weak transcription	Brain Germinal Matrix	brain
49	chr15:92662200-92664000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr15:92662200-92664200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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