Variant report

Variant	rs16946421
Chromosome Location	chr15:92662670-92662671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92657916..92660596-chr15:92660615..92664103,3	K562	blood:
2	chr15:92656493..92660596-chr15:92660615..92664122,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11638063	1.00[CEU][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes]
rs16946422	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16974269	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2283461	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34100035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34609355	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6496892	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6496893	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7170650	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3584923	chr15:92653655-92663201	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92641000-92663600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:92642400-92665000	Weak transcription	Gastric	stomach
4	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:92645400-92663400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:92647600-92663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:92648200-92692600	Weak transcription	NHLF	lung
12	chr15:92649000-92664000	Weak transcription	Ovary	ovary
13	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
14	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:92649600-92665000	Weak transcription	Esophagus	oesophagus
16	chr15:92652400-92664200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:92653000-92663400	Weak transcription	Primary T cells from cord blood	blood
18	chr15:92653000-92664200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:92653200-92663200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:92654600-92665000	Weak transcription	Spleen	Spleen
21	chr15:92655200-92664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:92655200-92665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:92655600-92667400	Weak transcription	Fetal Brain Male	brain
24	chr15:92656000-92665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:92656200-92665000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:92657200-92663600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:92657400-92663600	Weak transcription	Lung	lung
29	chr15:92657800-92665000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:92658200-92663600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:92658400-92663000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr15:92658600-92665200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:92658800-92663600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:92659200-92663600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:92659200-92664600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr15:92659400-92663400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:92659600-92664000	Enhancers	Liver	Liver
38	chr15:92659600-92664600	Enhancers	Fetal Lung	lung
39	chr15:92660200-92663200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:92660200-92663600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:92660600-92678600	Weak transcription	Thymus	Thymus
42	chr15:92660800-92663400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:92660800-92663600	Weak transcription	Fetal Thymus	thymus
44	chr15:92660800-92664000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:92660800-92664200	Weak transcription	Fetal Kidney	kidney
46	chr15:92660800-92665000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:92661000-92663400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:92661000-92663400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:92661000-92663600	Weak transcription	Aorta	Aorta
50	chr15:92661000-92663600	Weak transcription	Fetal Stomach	stomach

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