Variant report

Variant	rs34609355
Chromosome Location	chr15:92664418-92664419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:92664327-92664666	T-47D	breast:	n/a	n/a
2	GATA3	chr15:92664197-92664730	MCF-7	breast:	n/a	n/a
3	GATA3	chr15:92664261-92664799	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92663926..92666705-chr15:92668588..92670209,2	MCF-7	breast:

Variant related genes	Relation type
SLCO3A1	TF binding region
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11632723	0.93[ASN][1000 genomes]
rs11638063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16946421	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16946422	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16974269	0.93[EUR][1000 genomes]
rs2283461	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34100035	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6496892	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6496893	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7170650	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92641600-92665000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:92642400-92665000	Weak transcription	Gastric	stomach
3	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:92645400-92665000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:92648200-92692600	Weak transcription	NHLF	lung
9	chr15:92649000-92671400	Weak transcription	Colonic Mucosa	Colon
10	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:92649600-92665000	Weak transcription	Esophagus	oesophagus
12	chr15:92654600-92665000	Weak transcription	Spleen	Spleen
13	chr15:92655200-92665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:92655600-92667400	Weak transcription	Fetal Brain Male	brain
15	chr15:92656000-92665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr15:92656200-92665000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:92657800-92665000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:92658600-92665200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:92659200-92664600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:92659600-92664600	Enhancers	Fetal Lung	lung
22	chr15:92660600-92678600	Weak transcription	Thymus	Thymus
23	chr15:92660800-92665000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:92661000-92665000	Weak transcription	Brain Angular Gyrus	brain
25	chr15:92661000-92665000	Weak transcription	Pancreas	Pancrea
26	chr15:92661000-92667600	Weak transcription	Fetal Brain Female	brain
27	chr15:92661000-92670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
29	chr15:92661400-92665600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:92661600-92665000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:92662000-92665400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:92662000-92665600	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:92662000-92667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:92662000-92667800	Weak transcription	Brain Germinal Matrix	brain
35	chr15:92662200-92664600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr15:92662200-92664600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr15:92662200-92667000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr15:92662200-92667000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr15:92662200-92673400	Weak transcription	HMEC	breast
40	chr15:92662200-92673800	Weak transcription	NHEK	skin
41	chr15:92662400-92665000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:92662400-92667000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:92662800-92666800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:92663000-92677200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:92663200-92670200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:92663200-92671000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr15:92663400-92665000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:92663400-92665400	Weak transcription	A549	lung
49	chr15:92663400-92666000	Strong transcription	Primary T cells from cord blood	blood
50	chr15:92663400-92672800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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