Variant report

Variant	rs12451682
Chromosome Location	chr17:45853427-45853428
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12450008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12452307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16946878	0.92[EUR][1000 genomes]
rs17244544	0.92[EUR][1000 genomes]
rs17250953	0.92[EUR][1000 genomes]
rs17772855	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17773055	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41407050	0.85[EUR][1000 genomes]
rs72648867	0.88[EUR][1000 genomes]
rs72648868	0.88[EUR][1000 genomes]
rs72648869	0.88[EUR][1000 genomes]
rs7342896	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45850800-45855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:45852000-45853800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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