Variant report

Variant	rs17772855
Chromosome Location	chr17:45847773-45847774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12450008	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12451682	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12452307	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16946878	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17244544	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17250953	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17773055	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41407050	0.89[EUR][1000 genomes]
rs72648867	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72648868	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72648869	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45845800-45850600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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