Variant report
| Variant | rs17773055 |
|---|---|
| Chromosome Location | chr17:45858927-45858928 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:45858557..45860300-chr17:45896371..45898907,2 | K562 | blood: | |
| 2 | chr17:45857879..45859469-chr17:45866625..45868596,2 | K562 | blood: | |
| 3 | chr17:45857386..45859509-chr17:45915797..45918056,2 | MCF-7 | breast: | |
| 4 | chr17:45857831..45860289-chr17:45876780..45879686,2 | K562 | blood: | |
| 5 | chr17:45858321..45860299-chr17:45918299..45919999,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000141295 | Chromatin interaction |
| ENSG00000006025 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs12450008 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12451682 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12452307 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16946878 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17244544 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17250953 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17772855 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs41407050 | 0.85[EUR][1000 genomes] |
| rs72648867 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72648868 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72648869 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498122 | chr17:45763853-46064327 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv908572 | chr17:45858487-45900856 | Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv908573 | chr17:45858487-45956073 | Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
