Variant report

Variant	rs1246095
Chromosome Location	chr2:73706885-73706886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12713782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015477	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2091502	0.83[EUR][1000 genomes]
rs2421547	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2421549	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4241255	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4852926	1.00[AFR][1000 genomes]
rs4852941	0.89[EUR][1000 genomes]
rs56136045	1.00[EUR][1000 genomes]
rs6715316	1.00[EUR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73676200-73719400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:73677000-73714200	Weak transcription	Pancreas	Pancrea
3	chr2:73680200-73714200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:73688000-73714200	Weak transcription	Ovary	ovary
5	chr2:73697600-73717800	Weak transcription	Fetal Heart	heart
6	chr2:73700000-73713800	Weak transcription	Thymus	Thymus
7	chr2:73701800-73716800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:73702400-73716600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:73704400-73714000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr2:73704600-73716800	Weak transcription	HSMMtube	muscle
11	chr2:73704600-73721000	Weak transcription	HMEC	breast
12	chr2:73704800-73716800	Weak transcription	Brain Angular Gyrus	brain
13	chr2:73704800-73718600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:73705400-73714600	Weak transcription	Brain Anterior Caudate	brain
15	chr2:73705600-73713400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:73705800-73713400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr2:73705800-73722600	Weak transcription	Brain Substantia Nigra	brain
18	chr2:73706000-73707000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:73706000-73707000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr2:73706000-73707200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:73706000-73714000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr2:73706200-73707000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:73706200-73707000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr2:73706200-73707000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
25	chr2:73706200-73707000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:73706200-73707000	Strong transcription	Primary T cells from cord blood	blood
27	chr2:73706200-73707000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
28	chr2:73706200-73707000	ZNF genes & repeats	Adipose Nuclei	Adipose
29	chr2:73706200-73707200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
30	chr2:73706200-73707200	ZNF genes & repeats	Fetal Lung	lung
31	chr2:73706200-73707200	ZNF genes & repeats	Dnd41	blood
32	chr2:73706400-73707000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr2:73706400-73707000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr2:73706400-73707000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr2:73706400-73707000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr2:73706400-73707000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:73706400-73707000	Strong transcription	Brain Hippocampus Middle	brain
38	chr2:73706400-73707000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
39	chr2:73706400-73707000	ZNF genes & repeats	Fetal Kidney	kidney
40	chr2:73706400-73707000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
41	chr2:73706400-73707200	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr2:73706400-73707200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:73706600-73713400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr2:73706600-73714400	Weak transcription	Liver	Liver
45	chr2:73706600-73715000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr2:73706600-73721000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr2:73706800-73707000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
48	chr2:73706800-73707000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr2:73706800-73707000	ZNF genes & repeats	Fetal Muscle Leg	muscle
50	chr2:73706800-73707000	ZNF genes & repeats	A549	lung

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