Variant report

Variant	rs56136045
Chromosome Location	chr2:73716617-73716618
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr2:73716133-73716623	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73612210..73615081-chr2:73714696..73716979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221087	TF binding region
ENSG00000116127	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1246095	1.00[EUR][1000 genomes]
rs12713782	1.00[EUR][1000 genomes]
rs2015477	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2091502	0.83[EUR][1000 genomes]
rs2421547	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2421549	0.98[EUR][1000 genomes]
rs4241255	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4852941	0.89[EUR][1000 genomes]
rs6546871	0.91[EUR][1000 genomes]
rs6715316	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73676200-73719400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:73697600-73717800	Weak transcription	Fetal Heart	heart
3	chr2:73701800-73716800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:73704600-73716800	Weak transcription	HSMMtube	muscle
5	chr2:73704600-73721000	Weak transcription	HMEC	breast
6	chr2:73704800-73716800	Weak transcription	Brain Angular Gyrus	brain
7	chr2:73704800-73718600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:73705800-73722600	Weak transcription	Brain Substantia Nigra	brain
9	chr2:73706600-73721000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:73706800-73716800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:73706800-73717000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr2:73707000-73716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:73707000-73716800	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:73707000-73716800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr2:73707000-73717000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:73707000-73718000	Weak transcription	Fetal Kidney	kidney
17	chr2:73707000-73718000	Weak transcription	A549	lung
18	chr2:73707000-73733400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr2:73709200-73725400	Weak transcription	Fetal Brain Male	brain
20	chr2:73711800-73740400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:73712600-73716800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr2:73712600-73716800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:73712800-73716800	Weak transcription	Left Ventricle	heart
24	chr2:73712800-73717000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:73713000-73721000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:73713000-73721000	Weak transcription	Small Intestine	intestine
27	chr2:73713200-73716800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr2:73713200-73757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr2:73713400-73721000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr2:73713600-73716800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr2:73713800-73716800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr2:73713800-73716800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr2:73713800-73719600	Strong transcription	Primary T cells from cord blood	blood
34	chr2:73714000-73719200	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:73714400-73717000	Weak transcription	NH-A	brain
36	chr2:73714600-73717000	Weak transcription	Placenta	Placenta
37	chr2:73714600-73718600	Strong transcription	Right Ventricle	heart
38	chr2:73714600-73719200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr2:73714600-73721200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:73714600-73725200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr2:73714800-73716800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr2:73714800-73718800	Strong transcription	Fetal Muscle Trunk	muscle
43	chr2:73714800-73721200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:73714800-73722200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:73715000-73716800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr2:73715000-73716800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr2:73715000-73716800	Weak transcription	HSMM	muscle
48	chr2:73715000-73717000	Weak transcription	Psoas Muscle	Psoas
49	chr2:73715000-73717600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr2:73715000-73717800	Weak transcription	Fetal Lung	lung

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