Variant report

Variant	rs6715316
Chromosome Location	chr2:73663205-73663206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73613233..73615069-chr2:73661651..73663882,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1246095	1.00[EUR][1000 genomes]
rs12713782	1.00[EUR][1000 genomes]
rs2015477	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2091502	0.83[EUR][1000 genomes]
rs2421547	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2421549	1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs4241255	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4852941	0.89[EUR][1000 genomes]
rs56136045	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs780392	1.00[CEU][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73626800-73663400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:73626800-73664000	Weak transcription	Thymus	Thymus
3	chr2:73627400-73664400	Weak transcription	Pancreas	Pancrea
4	chr2:73637800-73663600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:73637800-73676200	Weak transcription	Fetal Brain Male	brain
6	chr2:73639200-73675400	Weak transcription	HMEC	breast
7	chr2:73642200-73666000	Weak transcription	NHLF	lung
8	chr2:73645400-73675200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:73645600-73675200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:73645600-73676600	Weak transcription	NH-A	brain
11	chr2:73645600-73685600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:73646000-73664000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:73646400-73675200	Weak transcription	Osteobl	bone
14	chr2:73646600-73663400	Weak transcription	Fetal Heart	heart
15	chr2:73646600-73664200	Weak transcription	Small Intestine	intestine
16	chr2:73647000-73684000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:73649600-73668000	Weak transcription	Gastric	stomach
18	chr2:73652000-73678400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr2:73652200-73688400	Weak transcription	Colonic Mucosa	Colon
20	chr2:73654400-73664200	Weak transcription	Left Ventricle	heart
21	chr2:73657200-73675400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr2:73658400-73676600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:73658800-73666200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr2:73659400-73675400	Weak transcription	Spleen	Spleen
25	chr2:73660200-73684400	Weak transcription	HUVEC	blood vessel
26	chr2:73660400-73664000	Weak transcription	Brain Angular Gyrus	brain
27	chr2:73661200-73664000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:73661400-73664400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr2:73661600-73664600	ZNF genes & repeats	Fetal Lung	lung
30	chr2:73661600-73665400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:73661800-73664000	ZNF genes & repeats	Dnd41	blood
32	chr2:73661800-73664400	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr2:73661800-73664600	ZNF genes & repeats	Brain Germinal Matrix	brain
34	chr2:73661800-73665000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr2:73661800-73665200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:73662000-73664200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:73662000-73664400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:73662000-73664400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr2:73662000-73664400	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr2:73662200-73665200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr2:73662200-73665200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr2:73662200-73665800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:73662400-73663600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
44	chr2:73662600-73663600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
45	chr2:73662600-73663800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
46	chr2:73662600-73663800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:73662600-73663800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
48	chr2:73662600-73663800	ZNF genes & repeats	Fetal Brain Female	brain
49	chr2:73662600-73664200	ZNF genes & repeats	Adipose Nuclei	Adipose
50	chr2:73662600-73664200	ZNF genes & repeats	Fetal Intestine Large	intestine

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