Variant report

Variant	rs12464162
Chromosome Location	chr2:184402628-184402629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10931088	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16824632	0.95[EUR][1000 genomes]
rs16824647	0.94[EUR][1000 genomes]
rs16824699	0.96[EUR][1000 genomes]
rs16824710	0.93[EUR][1000 genomes]
rs16824771	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1919276	0.82[EUR][1000 genomes]
rs2141414	0.84[EUR][1000 genomes]
rs4666922	0.93[EUR][1000 genomes]
rs56302218	0.82[EUR][1000 genomes]
rs58390523	0.93[EUR][1000 genomes]
rs59553799	0.94[EUR][1000 genomes]
rs59974361	0.95[EUR][1000 genomes]
rs60090891	0.94[EUR][1000 genomes]
rs6750378	0.83[EUR][1000 genomes]
rs73044524	0.94[EUR][1000 genomes]
rs73044536	0.82[EUR][1000 genomes]
rs73977910	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184398000-184405400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:184398200-184402800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:184400400-184406400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:184401600-184406400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:184401600-184406400	Weak transcription	Fetal Intestine Large	intestine
6	chr2:184401600-184406600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:184402000-184416800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:184402200-184403000	Enhancers	Fetal Intestine Small	intestine
9	chr2:184402200-184403200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:184402400-184403000	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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