Variant report

Variant	rs16824699
Chromosome Location	chr2:184388140-184388141
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:184387652..184388652-chr5:19684075..19684575,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10497627	0.94[ASN][1000 genomes]
rs10754996	0.97[ASN][1000 genomes]
rs10931086	0.96[ASN][1000 genomes]
rs10931087	0.96[ASN][1000 genomes]
rs10931088	0.87[EUR][1000 genomes]
rs11676026	0.94[ASN][1000 genomes]
rs11695835	0.93[ASN][1000 genomes]
rs11897765	0.95[ASN][1000 genomes]
rs12464162	0.96[EUR][1000 genomes]
rs12996552	0.95[ASN][1000 genomes]
rs13026970	0.95[ASN][1000 genomes]
rs1406334	0.96[ASN][1000 genomes]
rs16824632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16824647	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16824710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16824771	0.87[EUR][1000 genomes]
rs1919276	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1919278	0.96[ASN][1000 genomes]
rs2118477	0.95[ASN][1000 genomes]
rs2141414	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4572562	0.96[ASN][1000 genomes]
rs4574075	0.95[ASN][1000 genomes]
rs4666922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56302218	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58390523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59553799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59974361	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60090891	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60345524	0.95[ASN][1000 genomes]
rs66879817	0.95[ASN][1000 genomes]
rs6706093	0.96[ASN][1000 genomes]
rs6722136	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6750117	0.95[ASN][1000 genomes]
rs6750378	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67951091	0.95[ASN][1000 genomes]
rs73044524	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73044536	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73977910	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7558499	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184383800-184393800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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