Variant report

Variant	rs59974361
Chromosome Location	chr2:184375037-184375038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10497627	0.96[ASN][1000 genomes]
rs10754996	0.98[ASN][1000 genomes]
rs10931086	0.96[ASN][1000 genomes]
rs10931087	0.96[ASN][1000 genomes]
rs10931088	0.84[EUR][1000 genomes]
rs11676026	0.93[ASN][1000 genomes]
rs11695835	0.95[ASN][1000 genomes]
rs11897765	0.97[ASN][1000 genomes]
rs12464162	0.95[EUR][1000 genomes]
rs12996552	0.97[ASN][1000 genomes]
rs13026970	0.97[ASN][1000 genomes]
rs1406334	0.99[ASN][1000 genomes]
rs16824632	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824647	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824699	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16824710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16824771	0.85[EUR][1000 genomes]
rs1919276	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1919278	0.95[ASN][1000 genomes]
rs2118477	0.94[ASN][1000 genomes]
rs2141414	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4572562	0.99[ASN][1000 genomes]
rs4574075	0.97[ASN][1000 genomes]
rs4666922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56302218	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58390523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59553799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60090891	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60345524	0.97[ASN][1000 genomes]
rs66879817	0.94[ASN][1000 genomes]
rs6706093	0.99[ASN][1000 genomes]
rs6722136	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6750117	0.93[ASN][1000 genomes]
rs6750378	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67951091	0.94[ASN][1000 genomes]
rs73044524	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044536	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73977910	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558499	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508188	chr2:184353162-184383232	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184374200-184375400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:184374400-184376800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:184375000-184375400	Enhancers	HUES48 Cell Line	embryonic stem cell

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