Variant report

Variant	rs12471128
Chromosome Location	chr2:173155718-173155719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173149753..173152104-chr2:173154943..173157647,2	K562	blood:
2	chr2:173151457..173153226-chr2:173153949..173156314,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4522573	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4536625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4588155	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4972475	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4972787	0.88[MEX][hapmap]
rs62167402	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67694199	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7576759	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173150400-173158400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:173150400-173158400	Weak transcription	Brain Substantia Nigra	brain
3	chr2:173150600-173158200	Weak transcription	Fetal Kidney	kidney
4	chr2:173150800-173158600	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:173151000-173158200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:173151400-173158600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:173151400-173168000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:173151600-173157400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:173153000-173158800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:173153200-173158600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:173153400-173158400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:173153600-173158400	Weak transcription	Ovary	ovary
13	chr2:173153600-173158400	Weak transcription	HMEC	breast
14	chr2:173153600-173158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:173153600-173158600	Weak transcription	Stomach Mucosa	stomach
16	chr2:173153600-173158800	Weak transcription	Brain Anterior Caudate	brain
17	chr2:173153600-173160800	Weak transcription	Right Atrium	heart
18	chr2:173153800-173158400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:173153800-173158600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr2:173154000-173158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:173155000-173158000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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