The 2.0 version of rSNPBase

Variant report

Variant rs12471217
Chromosome Location chr2:190572063-190572064
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:190540200-190578000 Weak transcription Fetal Brain Male brain
2 chr2:190540400-190576400 Weak transcription Fetal Muscle Trunk muscle
3 chr2:190540800-190572200 Weak transcription Stomach Smooth Muscle stomach
4 chr2:190540800-190576400 Weak transcription Pancreas Pancrea
5 chr2:190540800-190592600 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr2:190540800-190611800 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr2:190540800-190618400 Weak transcription Brain Cingulate Gyrus brain
8 chr2:190541600-190617000 Weak transcription Colon Smooth Muscle Colon
9 chr2:190543600-190575400 Weak transcription Fetal Intestine Large intestine
10 chr2:190546200-190576400 Weak transcription Lung lung
11 chr2:190550600-190579000 Weak transcription Spleen Spleen
12 chr2:190550800-190576200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr2:190550800-190576400 Weak transcription Fetal Muscle Leg muscle
14 chr2:190550800-190577600 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr2:190550800-190578400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr2:190550800-190579000 Weak transcription Fetal Thymus thymus
17 chr2:190550800-190579400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr2:190550800-190591400 Weak transcription Primary T cells fromperipheralblood blood
19 chr2:190550800-190617000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr2:190550800-190626800 Weak transcription Right Ventricle heart
21 chr2:190551200-190572400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr2:190551200-190603400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr2:190551200-190617000 Weak transcription HSMM muscle
24 chr2:190552000-190576200 Weak transcription Rectal Smooth Muscle rectum
25 chr2:190553200-190576200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr2:190555600-190593000 Weak transcription Fetal Lung lung
27 chr2:190556400-190576400 Weak transcription Fetal Brain Female brain
28 chr2:190557400-190617000 Weak transcription Brain Angular Gyrus brain
29 chr2:190559200-190576200 Weak transcription Fetal Intestine Small intestine
30 chr2:190559400-190576400 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr2:190563000-190574200 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr2:190563400-190607800 Weak transcription Primary T cells from cord blood blood
33 chr2:190563600-190572200 Weak transcription Osteobl bone
34 chr2:190563600-190576400 Weak transcription Aorta Aorta
35 chr2:190563600-190593200 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr2:190563600-190608400 Weak transcription Brain Anterior Caudate brain
37 chr2:190563600-190611800 Weak transcription Brain Substantia Nigra brain
38 chr2:190563600-190612600 Weak transcription Brain Inferior Temporal Lobe brain
39 chr2:190563800-190576200 Weak transcription Primary hematopoietic stem cells blood
40 chr2:190564000-190593200 Weak transcription Liver Liver
41 chr2:190564400-190576400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr2:190564400-190576600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr2:190564400-190578200 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr2:190564800-190577800 Weak transcription Stomach Mucosa stomach
45 chr2:190568200-190594200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr2:190568200-190611600 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr2:190570000-190573000 Strong transcription Rectal Mucosa Donor 29 rectum
48 chr2:190570000-190573200 Strong transcription Adipose Nuclei Adipose
49 chr2:190570000-190576400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr2:190570400-190574400 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015