The 2.0 version of rSNPBase

Variant report

Variant rs12474770
Chromosome Location chr2:38981922-38981923
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:38979200-38983800 Weak transcription HSMM muscle
2 chr2:38979200-39005000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr2:38980800-38982000 Enhancers HepG2 liver
4 chr2:38980800-38982400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
5 chr2:38981000-38982000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr2:38981000-38982000 Enhancers Cortex derived primary cultured neurospheres brain
7 chr2:38981000-38982000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
8 chr2:38981200-38982000 Enhancers Primary neutrophils fromperipheralblood blood
9 chr2:38981200-38982000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr2:38981200-38982200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr2:38981400-38982000 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr2:38981400-38982000 Flanking Active TSS Primary hematopoietic stem cells blood
13 chr2:38981400-38982000 Active TSS Primary T helper naive cells from peripheral blood blood
14 chr2:38981400-38982000 Active TSS Primary T killer naive cells fromperipheralblood blood
15 chr2:38981400-38982000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr2:38981400-38982000 Enhancers A549 lung
17 chr2:38981400-38982000 Active TSS NHDF-Ad bronchial
18 chr2:38981400-38982000 Active TSS Osteobl bone
19 chr2:38981400-38982200 Active TSS Ovary ovary
20 chr2:38981400-38982200 Active TSS Right Atrium heart
21 chr2:38981600-38982000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr2:38981600-38982000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr2:38981600-38982000 Active TSS Primary monocytes fromperipheralblood blood
24 chr2:38981600-38982000 Active TSS Primary hematopoietic stem cells short term culture blood
25 chr2:38981600-38982000 Active TSS Primary T regulatory cells fromperipheralblood blood
26 chr2:38981600-38982000 Active TSS Primary Natural Killer cells fromperipheralblood blood
27 chr2:38981600-38982000 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
28 chr2:38981600-38982000 Flanking Active TSS Adipose Nuclei Adipose
29 chr2:38981600-38982000 Active TSS Duodenum Mucosa Duodenum
30 chr2:38981600-38982000 Active TSS Rectal Mucosa Donor 29 rectum
31 chr2:38981600-38982000 Flanking Active TSS Dnd41 blood
32 chr2:38981600-38982000 Active TSS GM12878-XiMat blood
33 chr2:38981600-38982200 Flanking Active TSS Primary B cells from cord blood blood
34 chr2:38981600-38982200 Active TSS Primary T helper naive cells fromperipheralblood blood
35 chr2:38981600-38982200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
36 chr2:38981600-38982200 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
37 chr2:38981600-38982200 Active TSS Liver Liver
38 chr2:38981600-38982200 Weak transcription Stomach Mucosa stomach
39 chr2:38981600-38982200 Active TSS Monocytes-CD14+_RO01746 blood
40 chr2:38981600-38982400 Enhancers Primary T helper cells PMA-I stimulated --
41 chr2:38981600-38982400 Enhancers Primary T helper 17 cells PMA-I stimulated --
42 chr2:38981600-38982400 Enhancers Primary T killer memory cells from peripheral blood blood
43 chr2:38981800-38982000 Active TSS Primary T cells from cord blood blood
44 chr2:38981800-38982200 Flanking Active TSS Primary B cells from peripheral blood blood
45 chr2:38981800-38982200 Flanking Active TSS Primary T cells fromperipheralblood blood
46 chr2:38981800-38982200 Flanking Active TSS Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015