Variant report

Variant rs3112183
Chromosome Location chr2:38977371-38977372
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:38970000-38977400 Transcr. at gene 5' and 3' GM12878-XiMat blood
2 chr2:38972200-38977600 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
3 chr2:38972400-38977600 Transcr. at gene 5' and 3' A549 lung
4 chr2:38972600-38978400 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
5 chr2:38973200-38978400 Transcr. at gene 5' and 3' Dnd41 blood
6 chr2:38973400-38978400 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
7 chr2:38973600-38977400 Transcr. at gene 5' and 3' Primary T helper memory cells from peripheral blood 1 blood
8 chr2:38973800-38978400 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
9 chr2:38974200-38977400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
10 chr2:38974200-38977600 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
11 chr2:38974600-38977600 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
12 chr2:38974800-38977400 Transcr. at gene 5' and 3' Primary T cells fromperipheralblood blood
13 chr2:38974800-38977400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr2:38974800-38977600 Transcr. at gene 5' and 3' NHEK skin
15 chr2:38975000-38977400 Transcr. at gene 5' and 3' iPS-18 Cell Line embryonic stem cell
16 chr2:38975400-38978400 Transcr. at gene 5' and 3' HUES6 Cell Line embryonic stem cell
17 chr2:38975600-38977400 Transcr. at gene 5' and 3' Muscle Satellite Cultured Cells --
18 chr2:38975600-38977600 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr2:38975600-38977600 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
20 chr2:38976000-38977400 Transcr. at gene 5' and 3' hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr2:38976000-38977400 Transcr. at gene 5' and 3' HepG2 liver
22 chr2:38976000-38977400 Transcr. at gene 5' and 3' HMEC breast
23 chr2:38976200-38977400 Transcr. at gene 5' and 3' H9 Derived Neuron Cultured Cells ES cell derived
24 chr2:38976200-38977400 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
25 chr2:38976200-38977400 Transcr. at gene 5' and 3' Foreskin Melanocyte Primary Cells skin03 Skin
26 chr2:38976200-38977400 Transcr. at gene 5' and 3' NHLF lung
27 chr2:38976200-38977400 Transcr. at gene 5' and 3' Osteobl bone
28 chr2:38976200-38979000 Active TSS Pancreatic Islets Pancreatic Islet
29 chr2:38976400-38977400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:38976600-38977400 Transcr. at gene 5' and 3' ES-I3 Cell Line embryonic stem cell
31 chr2:38976600-38977400 Transcr. at gene 5' and 3' Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr2:38976600-38977400 Transcr. at gene 5' and 3' Primary B cells from cord blood blood
33 chr2:38976600-38977400 Transcr. at gene 5' and 3' Primary T killer memory cells from peripheral blood blood
34 chr2:38976600-38977400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
35 chr2:38976600-38977400 Flanking Active TSS Brain Anterior Caudate brain
36 chr2:38976600-38977400 Flanking Active TSS Brain Hippocampus Middle brain
37 chr2:38976600-38977400 Transcr. at gene 5' and 3' Fetal Thymus thymus
38 chr2:38976600-38977400 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
39 chr2:38976600-38977400 Transcr. at gene 5' and 3' Skeletal Muscle Female skeletal muscle
40 chr2:38976600-38977600 Transcr. at gene 5' and 3' K562 blood
41 chr2:38976600-38978200 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
42 chr2:38976600-38978600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
43 chr2:38976600-38978800 Active TSS Pancreas Pancrea
44 chr2:38976600-38978800 Active TSS Stomach Mucosa stomach
45 chr2:38976600-38979000 Active TSS Ovary ovary
46 chr2:38976600-38979200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr2:38976600-38979200 Active TSS Psoas Muscle Psoas
48 chr2:38976600-38979200 Active TSS Right Ventricle heart
49 chr2:38976600-38979400 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
50 chr2:38976800-38977400 Flanking Active TSS Primary monocytes fromperipheralblood blood

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