Variant report

Variant	rs35387882
Chromosome Location	chr2:38985346-38985347
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:38983494..38986054-chr2:39002724..39005182,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10197412	0.87[ASN][1000 genomes]
rs10865143	0.90[ASN][1000 genomes]
rs11124646	0.83[EUR][1000 genomes]
rs1138975	0.81[ASN][1000 genomes]
rs12472454	0.83[ASN][1000 genomes]
rs12474770	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12618118	0.89[ASN][1000 genomes]
rs12621103	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12991609	0.92[ASN][1000 genomes]
rs13024811	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1979143	0.84[ASN][1000 genomes]
rs2037875	0.86[ASN][1000 genomes]
rs3097713	0.90[ASN][1000 genomes]
rs3097716	0.81[ASN][1000 genomes]
rs3099952	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3099960	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3099961	0.91[ASN][1000 genomes]
rs3099965	0.88[ASN][1000 genomes]
rs3099968	0.87[ASN][1000 genomes]
rs3099971	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3099980	0.81[ASN][1000 genomes]
rs3108666	0.84[ASN][1000 genomes]
rs3112142	0.81[ASN][1000 genomes]
rs3112150	0.81[ASN][1000 genomes]
rs3112152	0.84[ASN][1000 genomes]
rs3112156	0.84[ASN][1000 genomes]
rs3112161	0.84[ASN][1000 genomes]
rs3112178	0.87[ASN][1000 genomes]
rs3112183	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3112184	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3112186	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3112188	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3112189	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3112191	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3112192	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3112194	0.90[ASN][1000 genomes]
rs3112196	0.91[ASN][1000 genomes]
rs3112198	0.93[ASN][1000 genomes]
rs3112204	0.91[ASN][1000 genomes]
rs3112209	0.83[EUR][1000 genomes]
rs3112215	0.83[EUR][1000 genomes]
rs3134628	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134629	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134630	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134637	0.93[ASN][1000 genomes]
rs3731838	0.81[ASN][1000 genomes]
rs4670892	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4670894	0.87[EUR][1000 genomes]
rs6715866	0.93[ASN][1000 genomes]
rs6746818	0.85[ASN][1000 genomes]
rs756338	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv9646	chr2:38358311-39082189	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
3	esv1798055	chr2:38955865-39039504	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:38979200-39005000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:38982000-38986200	Weak transcription	HepG2	liver

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