Variant report

Variant	rs12486041
Chromosome Location	chr3:161840939-161840940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12496458	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12631780	0.88[AMR][1000 genomes]
rs2136711	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57135470	0.90[AMR][1000 genomes]
rs62278991	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62278993	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877713	chr3:161807012-161847016	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv877714	chr3:161807012-161854219	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv877715	chr3:161807012-161862628	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv877716	chr3:161817368-161847016	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv2753414	chr3:161826690-161935978	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv877717	chr3:161827760-161864213	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
9	nsv877718	chr3:161829492-161878713	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161840000-161841200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:161840000-161842400	Enhancers	Fetal Intestine Large	intestine
3	chr3:161840200-161841400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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