Variant report

Variant	rs12486703
Chromosome Location	chr3:99468927-99468928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12107242	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12494720	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13080329	0.83[ASN][1000 genomes]
rs13088056	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13088851	0.82[EUR][1000 genomes]
rs13099452	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1971381	0.84[ASN][1000 genomes]
rs28820982	0.84[ASN][1000 genomes]
rs34218799	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34303842	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34906671	0.82[EUR][1000 genomes]
rs35495890	0.82[EUR][1000 genomes]
rs35577846	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4408901	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4928144	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928219	0.82[EUR][1000 genomes]
rs55648906	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6440807	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73152013	0.82[EUR][1000 genomes]
rs7613580	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7614366	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7632327	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508231	chr3:99442020-99498951	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99440400-99471000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99443400-99471400	Weak transcription	Aorta	Aorta
3	chr3:99458600-99470000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:99458600-99470200	Weak transcription	Lung	lung
5	chr3:99458600-99471000	Weak transcription	NHLF	lung
6	chr3:99458600-99471200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:99458600-99472200	Weak transcription	Adipose Nuclei	Adipose
8	chr3:99462400-99495600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:99464200-99470200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:99464200-99471400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:99465400-99469200	Weak transcription	HUVEC	blood vessel
12	chr3:99467000-99470000	Weak transcription	NHEK	skin
13	chr3:99467000-99470200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:99467000-99471200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:99467200-99469400	Weak transcription	NHDF-Ad	bronchial
16	chr3:99467200-99469600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:99467200-99469800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:99467200-99470000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:99467200-99471000	Weak transcription	NH-A	brain
20	chr3:99467600-99469600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:99467600-99471200	Weak transcription	HMEC	breast
22	chr3:99467800-99469600	Weak transcription	HSMM	muscle
23	chr3:99467800-99472000	Weak transcription	HSMMtube	muscle
24	chr3:99468000-99469400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:99468400-99469200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:99468600-99469400	Strong transcription	Osteobl	bone

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