Variant report

Variant	rs13080329
Chromosome Location	chr3:99463810-99463811
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10935921	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12107242	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486703	0.83[ASN][1000 genomes]
rs12494720	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13081855	0.86[MEX][hapmap]
rs13088056	0.96[ASN][1000 genomes]
rs13088851	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13099452	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17778253	0.86[MEX][hapmap]
rs1971381	0.95[CHD][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs28820982	0.96[ASN][1000 genomes]
rs34218799	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34303842	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34906671	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35495890	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35577846	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4408901	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4928143	0.86[JPT][hapmap]
rs4928144	0.90[CHD][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4928219	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55648906	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6440807	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73152013	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7613580	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7614366	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7632327	0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508231	chr3:99442020-99498951	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99440400-99471000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99441400-99466800	Weak transcription	NH-A	brain
3	chr3:99443400-99471400	Weak transcription	Aorta	Aorta
4	chr3:99458600-99466600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:99458600-99466800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:99458600-99470000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:99458600-99470200	Weak transcription	Lung	lung
8	chr3:99458600-99471000	Weak transcription	NHLF	lung
9	chr3:99458600-99471200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:99458600-99472200	Weak transcription	Adipose Nuclei	Adipose
11	chr3:99460600-99466800	Strong transcription	Osteobl	bone
12	chr3:99460800-99466400	Weak transcription	NHEK	skin
13	chr3:99461400-99468400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:99461600-99466800	Strong transcription	HSMM	muscle
15	chr3:99461800-99466600	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr3:99462400-99495600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:99463000-99466600	Weak transcription	HMEC	breast
18	chr3:99463200-99466200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:99463400-99465400	Strong transcription	HUVEC	blood vessel
20	chr3:99463400-99466800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:99463600-99464000	Enhancers	NHDF-Ad	bronchial
22	chr3:99463800-99464000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:99463800-99464200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:99463800-99464600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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