Variant report

Variant	rs17778253
Chromosome Location	chr3:99435102-99435103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99429413..99432457-chr3:99433966..99437540,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs13059876	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs13060898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063594	1.00[JPT][hapmap]
rs13073356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13074107	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077478	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13079051	0.87[EUR][1000 genomes]
rs13079056	0.87[EUR][1000 genomes]
rs13079346	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13080329	0.86[MEX][hapmap]
rs13081855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13095226	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs13095282	1.00[JPT][hapmap]
rs13096116	1.00[JPT][hapmap];0.85[MEX][hapmap]
rs13097830	1.00[JPT][hapmap]
rs13100490	1.00[JPT][hapmap]
rs13100689	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17777354	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs34259523	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34265976	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34267913	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34510467	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34605311	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34795953	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34886851	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35170022	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35431878	0.84[EUR][1000 genomes]
rs35445146	0.82[EUR][1000 genomes]
rs35468254	0.84[EUR][1000 genomes]
rs35492383	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35522745	0.84[EUR][1000 genomes]
rs35640679	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35742383	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35804387	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55975637	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62281858	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281859	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283460	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283463	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283465	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283470	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283488	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62283491	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62283492	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62283493	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62283495	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6797919	0.86[GIH][hapmap]
rs71313564	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626245	1.00[JPT][hapmap];0.85[MEX][hapmap]
rs7636514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7649862	1.00[JPT][hapmap]
rs9859600	0.81[GIH][hapmap]
rs9883702	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99411400-99439600	Weak transcription	NHEK	skin
2	chr3:99423800-99440000	Weak transcription	Adipose Nuclei	Adipose
3	chr3:99426600-99439800	Weak transcription	NHLF	lung
4	chr3:99428000-99439600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:99428200-99436800	Weak transcription	Ovary	ovary
6	chr3:99428200-99439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:99428200-99442800	Weak transcription	Aorta	Aorta
8	chr3:99428400-99439600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:99431000-99436000	Enhancers	NHDF-Ad	bronchial
10	chr3:99433000-99435200	Weak transcription	HUVEC	blood vessel
11	chr3:99433200-99435800	Weak transcription	HSMMtube	muscle
12	chr3:99433400-99435400	Weak transcription	HSMM	muscle
13	chr3:99433400-99437200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:99433600-99436200	Genic enhancers	Osteobl	bone
15	chr3:99433600-99449200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:99434000-99435600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:99434000-99440000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:99434200-99435400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:99434200-99436400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:99434800-99435800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:99434800-99436000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr3:99434800-99436000	Genic enhancers	NH-A	brain
23	chr3:99434800-99436200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:99434800-99436400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr3:99435000-99435400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr3:99435000-99435800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:99435000-99436000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr3:99435000-99436400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr3:99435000-99436400	Enhancers	Muscle Satellite Cultured Cells	--

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