Variant report

Variant	rs35640679
Chromosome Location	chr3:99432710-99432711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FILIP1L-5	chr3:99432600-99432779	l_2414_chr3:99432599-99438909_testes

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13060898	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073356	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13074107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077478	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13079051	0.88[EUR][1000 genomes]
rs13079056	0.88[EUR][1000 genomes]
rs13079346	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13081855	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13100689	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17778253	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34259523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34265976	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34267913	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34510467	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34605311	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34795953	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34886851	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35170022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35431878	0.86[EUR][1000 genomes]
rs35445146	0.83[EUR][1000 genomes]
rs35468254	0.86[EUR][1000 genomes]
rs35492383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35522745	0.86[EUR][1000 genomes]
rs35742383	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35804387	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55975637	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62281858	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283488	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62283491	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62283492	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62283493	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62283494	0.82[AMR][1000 genomes]
rs62283495	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71313564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636514	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99411400-99439600	Weak transcription	NHEK	skin
2	chr3:99420000-99432800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:99420000-99433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:99423800-99440000	Weak transcription	Adipose Nuclei	Adipose
5	chr3:99425600-99433000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:99426600-99439800	Weak transcription	NHLF	lung
7	chr3:99427000-99434200	Genic enhancers	Muscle Satellite Cultured Cells	--
8	chr3:99428000-99439600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:99428200-99436800	Weak transcription	Ovary	ovary
10	chr3:99428200-99439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:99428200-99442800	Weak transcription	Aorta	Aorta
12	chr3:99428400-99439600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:99429600-99434000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:99430000-99433400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:99430600-99434800	Weak transcription	NH-A	brain
16	chr3:99431000-99436000	Enhancers	NHDF-Ad	bronchial
17	chr3:99432000-99434000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:99432000-99434200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:99432400-99433600	Enhancers	Osteobl	bone
20	chr3:99432400-99434000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:99432600-99432800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:99432600-99433000	Weak transcription	HSMM	muscle
23	chr3:99432600-99433000	Enhancers	HUVEC	blood vessel
24	chr3:99432600-99433200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links