Variant report

Variant	rs35431878
Chromosome Location	chr3:99498609-99498610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99498216..99500096-chr3:99501454..99503765,4	K562	blood:
2	chr3:99497311..99499461-chr3:99505852..99508651,2	K562	blood:
3	chr3:99497696..99500185-chr3:99535377..99538184,2	K562	blood:

Variant related genes	Relation type
ENSG00000184220	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13060898	0.84[EUR][1000 genomes]
rs13073356	0.91[EUR][1000 genomes]
rs13074107	0.86[EUR][1000 genomes]
rs13077478	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13079051	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079056	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079346	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13081855	0.91[EUR][1000 genomes]
rs13100689	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17778253	0.84[EUR][1000 genomes]
rs34259523	0.86[EUR][1000 genomes]
rs34265976	0.86[EUR][1000 genomes]
rs34267913	0.94[EUR][1000 genomes]
rs34510467	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34605311	0.91[EUR][1000 genomes]
rs34795953	0.91[EUR][1000 genomes]
rs34886851	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34971126	0.93[ASN][1000 genomes]
rs35170022	0.86[EUR][1000 genomes]
rs35445146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35468254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35492383	0.86[EUR][1000 genomes]
rs35522745	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35640679	0.86[EUR][1000 genomes]
rs35742383	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35804387	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281858	0.86[EUR][1000 genomes]
rs62281859	0.86[EUR][1000 genomes]
rs62283460	0.86[EUR][1000 genomes]
rs62283463	0.86[EUR][1000 genomes]
rs62283465	0.86[EUR][1000 genomes]
rs62283470	0.86[EUR][1000 genomes]
rs62283488	0.83[EUR][1000 genomes]
rs62283491	0.91[EUR][1000 genomes]
rs62283492	0.89[EUR][1000 genomes]
rs62283493	0.91[EUR][1000 genomes]
rs62283495	0.91[EUR][1000 genomes]
rs6788894	0.93[ASN][1000 genomes]
rs71313564	0.86[EUR][1000 genomes]
rs7636514	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508231	chr3:99442020-99498951	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99484400-99500400	Weak transcription	HSMMtube	muscle
2	chr3:99492000-99517600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:99493200-99499400	Genic enhancers	Osteobl	bone
4	chr3:99494000-99499200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:99494200-99500400	Weak transcription	HMEC	breast
6	chr3:99494200-99513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:99494600-99500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:99495800-99502000	Weak transcription	HUVEC	blood vessel
9	chr3:99496000-99498800	Weak transcription	NHLF	lung
10	chr3:99496000-99499200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:99496000-99499200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:99496000-99513000	Weak transcription	NHEK	skin
13	chr3:99496400-99498800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:99496400-99499000	Weak transcription	NH-A	brain
15	chr3:99496400-99500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:99496400-99505200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:99496800-99498800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:99497200-99499000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:99497200-99499200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:99497800-99498800	Strong transcription	HSMM	muscle
21	chr3:99498400-99499400	Strong transcription	Aorta	Aorta
22	chr3:99498600-99503000	Enhancers	NHDF-Ad	bronchial

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