The 2.0 version of rSNPBase

Variant report

Variant rs6788894
Chromosome Location chr3:99553787-99553788
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:99537200-99562600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr3:99537200-99594400 Weak transcription Esophagus oesophagus
3 chr3:99537800-99561800 Weak transcription Stomach Smooth Muscle stomach
4 chr3:99537800-99562400 Weak transcription Left Ventricle heart
5 chr3:99538000-99556000 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr3:99538000-99556800 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr3:99538000-99563600 Weak transcription Primary B cells from peripheral blood blood
8 chr3:99538200-99555400 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr3:99538200-99584600 Weak transcription Primary T cells from cord blood blood
10 chr3:99543000-99557200 Weak transcription Psoas Muscle Psoas
11 chr3:99543000-99562600 Weak transcription Placenta Placenta
12 chr3:99544200-99561800 Weak transcription NHLF lung
13 chr3:99544200-99564800 Weak transcription K562 blood
14 chr3:99544400-99554400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr3:99544400-99557800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr3:99544400-99561800 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr3:99544400-99561800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr3:99544800-99558000 Weak transcription NHEK skin
19 chr3:99545000-99557800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr3:99545000-99558000 Weak transcription HMEC breast
21 chr3:99545000-99562000 Weak transcription HSMM muscle
22 chr3:99549400-99556800 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr3:99551000-99561800 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr3:99551200-99555400 Weak transcription Small Intestine intestine
25 chr3:99551200-99556000 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr3:99551200-99560200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr3:99551200-99566000 Weak transcription Primary T helper cells PMA-I stimulated --
28 chr3:99551600-99562600 Weak transcription Fetal Muscle Trunk muscle
29 chr3:99552400-99561600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr3:99552600-99556600 Weak transcription Fetal Intestine Small intestine
31 chr3:99552800-99554200 Weak transcription HepG2 liver
32 chr3:99552800-99555400 Weak transcription Ovary ovary
33 chr3:99552800-99557200 Weak transcription Right Atrium heart
34 chr3:99552800-99558200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr3:99552800-99561600 Weak transcription Fetal Stomach stomach
36 chr3:99552800-99561600 Weak transcription Osteobl bone
37 chr3:99552800-99561800 Weak transcription Fetal Muscle Leg muscle
38 chr3:99552800-99562000 Weak transcription Adipose Nuclei Adipose
39 chr3:99552800-99562400 Weak transcription Pancreas Pancrea
40 chr3:99553000-99561800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr3:99553200-99554200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr3:99553400-99554000 Enhancers Primary neutrophils fromperipheralblood blood
43 chr3:99553400-99554000 Enhancers GM12878-XiMat blood
44 chr3:99553400-99557000 Weak transcription Aorta Aorta
45 chr3:99553600-99554600 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015