Variant report

Variant	rs34971126
Chromosome Location	chr3:99523265-99523266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13063594	0.82[AMR][1000 genomes]
rs13079051	0.93[ASN][1000 genomes]
rs13079056	0.93[ASN][1000 genomes]
rs13082013	0.82[AMR][1000 genomes]
rs13084413	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13095282	0.82[AMR][1000 genomes]
rs13097830	0.82[AMR][1000 genomes]
rs13100689	0.93[ASN][1000 genomes]
rs34571898	0.82[AMR][1000 genomes]
rs34886851	0.82[ASN][1000 genomes]
rs35098023	0.82[AMR][1000 genomes]
rs35431878	0.93[ASN][1000 genomes]
rs35445146	0.93[ASN][1000 genomes]
rs35468254	0.93[ASN][1000 genomes]
rs35522745	0.93[ASN][1000 genomes]
rs35804387	0.93[ASN][1000 genomes]
rs62283494	0.84[EUR][1000 genomes]
rs6788894	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7649862	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99510000-99523600	Weak transcription	HUVEC	blood vessel
2	chr3:99514200-99523600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:99514800-99523600	Weak transcription	Aorta	Aorta
4	chr3:99516800-99523600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:99522400-99529600	Weak transcription	Psoas Muscle	Psoas
6	chr3:99522600-99524400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr3:99523000-99524400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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